Petromyzon marinus (sea lamprey): 103091841
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Entry
103091841 CDS
T09614
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03015
mRNA surveillance pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103091841 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
103091841 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
103091841 (PABPC1)
03041 Spliceosome [BR:
pmrn03041
]
103091841 (PABPC1)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103091841 (PABPC1)
mRNA cycle factors
Stress granule specific factors
103091841 (PABPC1)
Spliceosome [BR:
pmrn03041
]
Complex C
Other components
Complex C specific factors
103091841 (PABPC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RBD_DEAH11
RRM_occluded
RRM_10
DUF8400
RRM_PARP14_3
YflT
POP1_C
SCI1_hairpin
Motif
Other DBs
NCBI-GeneID:
103091841
NCBI-ProteinID:
XP_032810439
UniProt:
A0AAJ7WUA9
LinkDB
All DBs
Position
15:complement(200714..207282)
Genome browser
AA seq
630 aa
AA seq
DB search
MNPAGPSYPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFE
RHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVK
NLDDNINDERLWKEFSPFGTITSAKVMMEEGRSRGFGFVCFSSPEEATKAVTEMNGRIIG
SKPLYVALAQRKEERKMHLTSQFMQRLAGMRAVPPSAIIGQYQPAAASGYFMAAMPQQAQ
GRTAYYTPSPMAPMRPNPRWPLQVRPQGAHAAGFQAITGPMRQPAPRPTQMRTVNPASVP
QVPRASQGMMPRPTFPTQAAGPRALPGYKYTGSVRNPQQPGVQGPGAMQQAPQSAVHIQG
QEPLTASMLAAAPPHEQKQMLGERLFPLIHGMYPTLAGKITGMLLEIDNSELLHMLESPE
SLRAKVEEAVAVLQAHQAKEAAQKAAVGAM
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccgccggacccagctaccccatggcctcgctctacatcggcgacctgcacccc
gacgtgacggaggccatgctctacgagaagttttctcccgcggggcccatcctctccatc
cgcgtgtgccgcgacatgatcacgcgccgctcgctcggttacgcctacgtcaacttccag
cagccggccgacgccgagcgggcgctggacacgatgaacttcgacgtggtcaaggggaag
cccatacgcattatgtggtcacagagagatccgtcgctgaggcgctcgggcgtcggaaac
atcttcatcaagaacctagacaagtcgatcgacaacaaggccctgtacgacaccttctca
gcctttgggaacatcctatcgtgcaaggtggtgtgcgacgaaaacggctcaaagggctac
gggttcgtgcactttgagacgcaggaagcagcggacaaggccattgagaagatgaacggc
atgcttctcaacgaccgaaaagtgtttgtggggcggttcaagtcacgaaaggagcgagag
gcagagtttggagcgaaagcacgcgaattcactaacgtctacatcaagaacttcggggat
gacatggacgatgagcgactacgcgagtacttcgagcagtacgttgggaagaccctgagc
gtaaaggtgatgatggacgaaggtggaaagtccaagggctttgggttcgtgagtttcgag
cgacacgaagacgcgcagaaggcggtggacgagatgaacaccaaagagttgaatggtcgc
gccatatatgtggggcgcgcgcagaagaaggcggagcggcagactgagctgaaacgcaag
tttgagatgctcaagcaggagcgcatgagcaaataccagggagtgaacttgtacgtgaag
aacctcgatgacaacatcaacgacgagcgtctgtggaaggaattctcccccttcggcaca
attactagtgccaaggtaatgatggaggagggccgcagtcggggctttggcttcgtgtgc
ttctcatcacccgaggaggccactaaggctgtgacagagatgaacggccgcatcatcggc
tccaagccactgtatgtggcgctggcacagcgcaaggaggagcgcaagatgcacctgaca
tcacagttcatgcagcgcttggccggcatgcgtgccgtgccgcccagcgccatcatcgga
cagtaccagccggccgcagcatccggatacttcatggcggccatgccacagcaggcccaa
ggccgcacggcgtactacacaccaagcccgatggcgcccatgcggcccaacccccgttgg
cccctgcaggtgcggccacaaggagcgcacgcagcaggcttccaggcgattaccggtccc
atgaggcagccagcgccacgaccgacacaaatgcgcacggtgaacccagcgagcgttccc
caggttccacgggcgtcacagggcatgatgccgcgccccacattcccgacccaggcagcc
gggccacgcgctctgccaggctacaagtacacgggcagcgtgcggaacccgcagcagccc
ggggtgcagggccctggcgccatgcagcaggcccctcagtcagccgtgcacatccagggc
caagagccgctcaccgcctccatgctggccgctgctccaccacacgagcagaagcagatg
ctgggtgaacgtctcttcccactgatccatggcatgtacccaaccctggccggcaagatc
acgggcatgttgttggagatcgacaactcggagttgctgcacatgctcgagtccccagaa
tcgctgcgtgccaaggtggaggaggctgtggctgtgctgcaggctcaccaggccaaggag
gctgctcagaaggcagctgttggggccatgtag
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