Petromyzon marinus (sea lamprey): 116938532
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Entry
116938532 CDS
T09614
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116938532 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmrn03032
]
116938532 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116938532 (TOPBP1)
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
116938532 (TOPBP1)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116938532 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
TopBP1_BRCT0
LIG3_BRCT
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
116938532
NCBI-ProteinID:
XP_032801601
UniProt:
A0AAJ7SNF9
LinkDB
All DBs
Position
4:7374448..7412125
Genome browser
AA seq
1564 aa
AA seq
DB search
MTKRSAEKLFVKFVEDNENESKYFKEAYEKICKIQSESLLQRVDAAKVLTLKEKDRSLYV
CDPFHGVAFDHLVKMGCRVVGPQVVLFCLDRERCVPKAEHPVYNMALADAVLSCTNLDKD
VREEMHRLIGLMGGRVLRDFTSAVTHLVAGEVGSKKYLVAASLKKPIMLVSWITTCWEAS
QERMVCGTDNEWLEKHMCPPLQGCMLSVTGLSTQERRDIQRLVTKHGGTYSGELKMNECT
HLIVHKPHGQKYEFARKWNVACVTVQWLHDSVERGACQDESLYSVLPLDDIEGGPQEPST
STPSPSRGRPGSCAMSNVSSISNISMSRINETVSTTSMATRLEVMAMGARAEVDELDSLD
PAHLYGLDSLLDGCKIFVCGFSGKRLEKLRRLVNLGGGVRYNQNSADVTHIIVGDRGRER
DLTLVQENSMRNVVTAKWLVDCFTQRRLLPTELYLHPDYTAPEEILLQAPLAPVASAPSQ
QRVPPLTAQGPAGRGRGIRSNAGDGMERTDDELMLQYSQSTADGMVSRNATDRTYTEESH
TNTTIINAMPSTRLLASMATKGDSTLCEDSGAGIFSGKRFAVVGFSADEESELALLVSEH
GGKMLPKNSRAVAHYAVVPLLGCEVENTVHEVVTNTWLVMCVEQQKLLELNSNPLFTPVP
VLEGHYPLSACVLSISQFTGTERDSLIFLAERLGARVQEFFVRKANPKKNMHASTHLLVR
EASGCKFEAAIKWDLPAVGVGWLLESARKGCRAKEHRHTVRLAQTTEPGTPVSAGQSREQ
EMPNAAPVVDAAHTPTDSSLALESKFVTPLDFNRFRSKTFHNVLAAERDGTASSEAAAAM
DPKVGAVVGKAASDKDTARKVAGGGSGSEAPQDTPSKFLCRDKLIKPCFDVKDSLKALES
PEGGQGAADRSASGTPLSQLFRNNLNVALANSTRPVDPASPVLPKAVQREQKETTSILSG
VVICVSKKLSKRQAELNSIAASLGAEYRWSFDEEVTHFVYQGRANDNSQEYRVVRDRGIH
VVSEHWLHACAQEQKHVAETLYPHSYNPSLSLDLSAVQQPQRVTRTLRRHPGSCAVNSQD
LDTEEEDEYIAQHGKHSNQQYEQSKDTIIGKNDALATLELRENLQQQLQEIMMATKAGAI
GPSRLGTNSPQPQQDTSSGAMRSGRISRSRTWDNVRSSPAPLDTHSEQSQGDQITWDDPT
AREERARLATQLHCGAMNSTPGPTSGPPPDPIPTSSTAKQQPPLVQPALANVEKSKQEVP
EQAVKLPAGPDSTPQAPSIAFPLANPPVAPQPPETESGGHEGDAIQPHRYFQLSSMSAQE
RIDYLQLIEQLGGVVLDKQYFDPSCSHIIVGNPLRNEKYLASMAAGKWVLHKSYLEACRA
MGRFVQEEEYEWGSSHILDALANLTTQQRRLATAAMRWRKKLQLQRRQEPGAQVGAFGGW
KVILNIEQSKESGFRRLLQSGGAEVLSSGEAQALEEATHLFVDVARLRSEEVRTGLLQAA
AQHVHCLRPEYIADFLIMDSPPNLEQYYIPDGPALQAGEESGPSTARKRKATDSALKEKR
SRLQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacgcagtgctgagaagctatttgtaaagtttgttgaagacaatgaaaatgaa
tcaaaatatttcaaagaagcttatgagaaaatctgcaaaattcagtcggagtcgttactg
cagcgagtggatgcggcgaaggtgctgacattgaaggagaaggataggtcactctatgtg
tgcgaccccttccatggagtcgcctttgaccaccttgtcaaaatggggtgccgagtggtg
gggccacaagtggtgctgttctgcttggacagggagcgctgcgttccaaaggctgagcac
cctgtgtataacatggctcttgcagacgcagtactgtcctgcaccaaccttgacaaggat
gtccgtgaggaaatgcacaggctgatagggctgatgggaggccgggtgctgagggacttc
acaagtgccgtcacccacctggtggctggggaggttggcagcaagaagtacttggtggct
gccagtctgaagaagcccataatgcttgtctcctggatcaccacttgctgggaagcttcc
caggagaggatggtgtgcggtacggacaatgagtggctagagaagcacatgtgtccacca
ctgcagggctgcatgctgagtgtaacggggctaagcacccaggagagacgggacatccag
cgcctcgtaaccaagcatggtggcacctactctggagaactcaagatgaacgagtgcacg
cacctcatcgtgcacaagccacatgggcaaaagtatgaatttgcacgcaagtggaacgtg
gcgtgcgtgacggtgcagtggctgcacgacagtgtggagcggggagcgtgccaggacgag
agtctctactccgtgctgccactcgatgacatagagggggggccccaggagccgagcacc
tccacaccctccccctcacgcggccgccctggctcctgtgccatgtcaaacgtaagcagc
atctcgaacataagcatgagtcgcatcaacgagacggtctccaccacatccatggccaca
cggttggaggtgatggcaatgggggctcgggccgaggtggacgagctggattccctggac
cctgcacatctgtatggccttgactctttattggatggctgcaagatctttgtgtgcggg
ttttctgggaaacgtctggagaagctgcggaggctggtaaacctcggtggaggagtacgc
tacaaccagaacagtgcagatgtgactcacatcatcgtcggggaccgtggccgggagcgg
gatctgactcttgtgcaggagaactccatgcgtaacgtcgtgacggccaagtggcttgta
gactgcttcacccagcgccgcctactaccaaccgagctgtaccttcatcccgactacacg
gccccagaggagatcctcctgcaggcccctttggcccccgtagccagtgccccgagtcag
cagagagtgccgcccctcactgcgcagggccctgcagggcgaggccgtggaatccgcagc
aatgccggtgacgggatggaacggacagatgatgagctcatgttgcaatattcacagtca
acagcagatggcatggtcagcagaaatgcaacagacagaacgtacacggaagaatctcac
accaatacaacaatcatcaacgcgatgccttccacaagacttttggcgagcatggccacc
aagggcgactcgacgctgtgcgaggactcaggtgccggtattttcagcggcaagcggttt
gcggtggtggggttctctgcagacgaggagtccgagctggcactgctggtgagcgagcac
ggcgggaagatgctgccaaaaaattctcgcgccgtggcccactacgccgtggtgcctctg
ctgggctgcgaggtggagaacactgtgcacgaggtcgtcaccaacacatggctggtgatg
tgcgtggagcagcaaaagttgctggagctcaattccaaccctctgttcacgcctgtgccc
gtgctggagggacactacccactgtccgcctgcgtcctgtcaatcagtcagttcacaggg
actgaacgtgactctctcatcttcctggctgaaagacttggggcaagggtacaggagttt
tttgtgcgcaaggctaatcccaagaagaacatgcatgcgagcacacacctcctggtgcga
gaggccagcggctgcaagtttgaggcagcgatcaagtgggatctaccagcagtgggcgtg
ggttggctgcttgagtcggctcgcaagggatgtcgcgccaaggagcacaggcacactgtg
cggctcgcccaaaccacagagcctggtacgccagtcagtgctggccagagccgtgaacag
gagatgcccaatgctgcaccggtggtagacgcagcacacacacccacagattcatcgctc
gcactggagtccaagtttgtgacgccactggactttaatcgttttcgaagcaaaactttc
cacaacgtactagcagcggagagggatggcacagcatcatctgaggcagcggccgcgatg
gatccgaaggtgggtgcagttgtcggcaaggctgcctcagataaggacactgctcggaaa
gtggcaggcggtggcagtgggtcagaggctccccaggacacaccctccaaattcctctgt
cgagacaaactcatcaagccctgctttgatgtgaaggactcgctcaaggccttggagtca
cctgagggcgggcagggtgcagctgaccgctcggccagcggcacacccctgtctcagctc
ttccgcaacaacctcaacgtggccctggccaacagcacccggcccgtagaccccgccagc
cccgtgttgcccaaggccgtgcaacgtgagcagaaagaaaccacaagcattttatcagga
gtggtgatatgcgtgagcaagaagcttagcaagagacaggcagagctgaacagcatcgct
gcctcgctgggagcggagtatcggtggagctttgatgaggaagtgacgcatttcgtctat
cagggccgagctaacgacaactcgcaggagtaccgtgtcgtgcgtgatcgtggcatccac
gtcgtgtccgagcactggctacacgcttgtgctcaggagcagaagcacgtggctgagact
ctgtacccacactcctacaaccccagcctgagcctggacctgagtgcagtgcagcagcca
cagcgtgtgacacgtaccttgcggcggcatcccggctcatgcgctgtcaacagccaggac
ctggacacagaagaggaggatgaatatatagcccagcatggaaaacattccaaccagcaa
tatgagcagagtaaagatacaattataggaaaaaatgatgcgctggcgacgctggagttg
cgggagaacttgcagcaacagctccaggagatcatgatggcaacgaaggcaggagcaatt
ggccccagccgtctgggcaccaactccccgcagcctcagcaagacacaagcagcggggca
atgcgctcaggacggatcagccgcagtcgaacctgggacaacgtgaggtcgtctcctgca
cctctggacacgcactctgagcagtcgcagggcgaccagatcacgtgggatgaccccacg
gctcgggaggagcgtgcccgcctagcaactcagctgcattgtggagccatgaactccaca
cccggcccgacttctgggccgcctcctgaccccattcctacatccagcacagccaagcag
cagcctccccttgtccagcctgcgctcgcgaacgtggagaagagcaagcaggaggttcct
gagcaggcagtgaagctgcctgccggcccggactccacgccacaggcaccaagcatcgcc
ttcccactcgcaaaccctcctgtggcgccacaacctccagagacggagagtggtgggcat
gagggtgatgccattcagccccatcgttacttccagctttcttccatgagtgcccaggag
cgcattgactacttgcagctcatagagcagcttggtggagtggtgctggataagcagtac
ttcgacccaagctgcagccatatcatcgtaggaaaccctctgcgcaatgagaagtacctg
gcgtcaatggcagctgggaagtgggtgctacacaaatcctacttggaagcgtgccgagcc
atgggccgctttgtgcaggaggaggagtatgagtggggtagcagccacatcctggatgcc
ctagccaacctcaccacccagcagcgccgcctcgctacagctgccatgcgttggcgtaaa
aagctacaacttcagcgacggcaggagcctggagcccaggtcggtgcgttcggtggctgg
aaggtgatcctgaatattgaacagagcaaagagtcaggcttcaggaggctactgcagtcg
ggaggcgcagaggtgctgtcgagcggtgaggcccaggcactagaagaggccacacatctg
tttgtggacgtggcgcgattgcggtcggaggaggtccgcactgggctgctgcaggccgcg
gcacaacatgtgcactgcctacgtcccgagtacatcgctgacttcctcattatggattcc
ccacccaatctggagcagtattacatcccagatgggccagcactacaagcaggcgaggaa
tctggcccctccactgcccgaaaacgaaaagccacagattcagcattgaaagaaaaacga
tctcgactccaatga
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integrated database retrieval system
