Petromyzon marinus (sea lamprey): 116938542
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Entry
116938542 CDS
T09614
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116938542 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116938542 (SMARCC2)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116938542 (SMARCC2)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116938542 (SMARCC2)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116938542 (SMARCC2)
PBAF complex
116938542 (SMARCC2)
GBAF(ncBAF) complex
116938542 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
BRCT_2
Motif
Other DBs
NCBI-GeneID:
116938542
NCBI-ProteinID:
XP_032801647
UniProt:
A0AAJ7SNI9
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All DBs
Position
4:7700762..7723668
Genome browser
AA seq
1118 aa
AA seq
DB search
MRGLGAARRADNMAARKKDGGPNVKFLESTDTVAQFDNVRQWLGKHYKKYIQAEPPTNKS
LAGLVIQLLQFQEEVMGKHVSNPPLTRIPMKCFMDFKAGGSLCQILAAVYKFKSDQGWRR
FDFQNPSRMDRNVEMFMTIEKLLVQNNCLSRPNIYLHPDIDHKLASKLKDIVKRHQGSLT
DDKSNASHVVFPLPANHDEDEWVRPVMKKDRQMLLHWGFYPDSYDTWLMANEVDAEVEDM
PPRNGPWKVHVKWILDTDTFNEWMNEEDYEVDDSRNTVSTRKKISAKTLGDEANSPESDR
RERRGSSMKKRKRSPSPPPVDTKKKNIKKGPATPSGKKRGQREEDQEDSSRDGDNSSQAP
SVEENKPPKTEEQTDKTVESITKEGETVVGPKPDQAKNPDQLEDNVTDQMHHIVVPSYAA
WFDYNSIHAIERRALPEFFNGKNKSKTPEVYLAYRNFMIDTYRLNPQEYLTSTACRRNLA
GDVCAIMRAHAFLEQWGLINYQVDTDSRPAAMGPPPTSHFHVLVDTPSGLVPLQPKTTPV
ASVQPTPNNSDKAKEKTGELQNFGLRSDMYAKKDGTSAKSKIAGSGARDWTDQETLLLLE
GLEMFKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEEGVGSLSSLGPLAYQPVPFSQ
VGNPVMSTVAFLASVVDPRVATAAAKAALDEFQKMKEEVPSALVETHVKKVEEAAKSSGK
ADPSFGLESSGIAGTAPEQQEKIGTRVTACVLEEAKREEPTEEPKADSQISDEKKDDKEE
KAAEGAEEGPKEKAAEGEKKAEDGVMEWENQSKEDKSKESEKDAEEKENETAIEKEKAEN
GEKKKMERDIGEGNLATAAASALASAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELESIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQHHFQQMQHQHHLPPP
GPVAAAPPQPIHPPHVQQPSLSNPPSTSSAQPSPTVQPANAAGPVPAAPSGTGVLDGQPQ
PSGAQQQNLPQSAIAQSSTPAQAAAGEQQSSAGAASSSGAGSPSNGAVSTRTQNPAMGPS
AQDGTPTESSPAPVEQGNPAPSEDVATPPAAAMAAAPQ
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcctcggcgcggcgaggcgcgcggacaacatggcggcgcgcaagaaggacggc
ggtcccaacgtgaagttcctcgagtcgacggacaccgtggcgcagttcgacaacgtgcga
cagtggctgggcaagcactacaagaagtacatccaggcagagcctcccaccaacaaatct
ctcgctggcctggtgattcagctactgcagttccaagaggaagttatgggaaagcatgtc
agcaatccccctctcactcggattccgatgaagtgtttcatggatttcaaagctggaggg
tctctgtgtcaaatcttggccgctgtgtacaaatttaaaagtgaccagggatggaggcgg
tttgatttccaaaatccatctcgcatggaccgcaatgtagagatgttcatgaccatcgaa
aaactgcttgtacagaataattgcttgtctaggccaaatatctaccttcatcctgatatt
gatcacaagttggcaagcaaactcaaggatatagtgaaacgacatcagggatcgctaacg
gatgacaaatcaaatgcttctcacgtggtctttcctcttccagctaaccacgatgaagat
gagtgggtgcggcctgtaatgaaaaaggatcgccaaatgctcctgcactggggcttctat
cctgacagctatgacacatggctgatggctaatgaggttgacgctgaagtagaggacatg
cccccacggaatggaccctggaaggtgcacgtcaaatggatcttggacacagacacgttt
aatgagtggatgaatgaggaggattacgaagtggatgactctcggaataccgtcagtacc
aggaaaaaaatttctgccaagactcttggtgatgaggccaacagccccgagtcggaccgg
agggagagaagaggcagcagcatgaaaaagcgcaaacgctcgccatctccaccacccgta
gacaccaagaaaaagaacatcaagaaagggccggctactccgtcaggtaagaagaggggt
cagcgggaggaagaccaagaggactccagtcgtgatggagacaactcgtcgcaggcacca
agtgtggaagagaacaagcctcccaagactgaagagcagactgataaaacagtggagtct
ataaccaaggagggcgagactgttgtgggacccaagcctgatcaggcaaagaaccccgac
cagttggaggacaacgtaactgaccagatgcaccacatcgtcgtgcccagctacgctgcc
tggttcgactacaacagcattcatgctatcgaacgacgtgccctacccgagttcttcaat
gggaagaacaagtccaaaaccccagaagtgtacctggcataccgtaacttcatgatcgac
acgtatcggctgaatccccaagagtacttgaccagcaccgcctgccgtcgcaaccttgct
ggggatgtgtgtgctatcatgagagcccatgcattcctcgagcaatggggcctcataaac
taccaggtggatactgatagccgaccagcagccatgggaccgccaccgacttctcacttc
cacgtgctggtggacaccccctccggcctggtgcccctccaaccaaaaaccactccggtg
gcgtccgtgcaacccaccccaaacaactcggacaaagcgaaggagaagacgggagaactc
caaaactttggactgcggtcagacatgtatgccaaaaaggatggcacatctgctaagtca
aagatagctggttctggtgccagagactggactgaccaggaaactctattgttacttgaa
ggcctggaaatgttcaaggatgactggaacaaagtgtcggagcacgtgggcagccgcacg
caggacgagtgcattctgcacttcctgcggctgcccatcgaggacccctacctggaggag
ggtgtgggctctctgagctcattaggaccactcgcttaccagcccgtcccgttcagccag
gttggcaaccccgtcatgagcaccgtggcgttcctcgcgtccgtcgtggacccacgcgtc
gccaccgccgcagcgaaggccgccctggatgagttccagaagatgaaggaagaggtgccc
tcggccctggtggagacgcacgtgaagaaagtggaggaggcagccaagtcgtccggcaag
gccgacccctcgttcgggttggagagcagtggcatagcgggcacggcacccgagcagcag
gagaagattggtacgcgtgttactgcgtgcgtgctggaggaagccaaacgggaggagccc
accgaggagcctaaagctgacagccagataagtgatgaaaagaaagatgataaggaggaa
aaggcagcagagggcgctgaggaaggtcctaaggaaaaggcagcggagggggagaagaaa
gcggaggatggtgtcatggagtgggaaaaccagagcaaggaggacaagagcaaagaaagt
gaaaaggatgcagaagagaaagagaatgagactgccattgagaaggagaaagctgagaat
ggagaaaagaagaaaatggagcgcgatatcggggaaggaaaccttgccactgctgctgct
tctgccctcgcatcggctgctgttaaagccaagcatctagcggctgtggaagagcggaag
ataaagtcgctggtggctctgctggtggagacgcagatgaagaaacttgaaatcaagctg
aggcactttgaagagcttgaaagcattatggatcgcgagagagaagcgctggagtaccag
cggcagcagctcctggccgacaggcaggccttccacatggagcagctcaagtatgcggag
atgagggcccggcagcatcacttccagcagatgcagcatcagcaccacctccctcctcca
ggccctgtagccgccgccccaccgcaacccatccacccgccccacgtgcagcagccttca
ctgagcaaccctcccagcacgtccagtgcacagccgagcccgaccgtgcagcctgccaac
gctgccggacccgtgccagcggcaccgagtgggactggggtccttgatggccagccgcag
ccttcaggagctcagcagcaaaatctgccacagtctgcaatagcccagtcgtcaacacct
gcacaagctgctgcaggagagcagcagtcatcggcaggagcagccagctccagtggtgca
ggatcaccgtccaatggagctgtgtccaccaggacccagaatccagccatgggcccctct
gctcaagatggcacccctacggagagcagcccagcaccagtagagcaaggaaatccagct
ccaagtgaggatgtggctactccaccagctgctgcaatggcagcagcaccgcagtga
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integrated database retrieval system
