Petromyzon marinus (sea lamprey): 116938769
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Entry
116938769 CDS
T09614
Symbol
PODN
Name
(RefSeq) podocan
KO
K25037
podocan
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pmrn00535
]
116938769 (PODN)
Proteoglycans [BR:
pmrn00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class V
116938769 (PODN)
BRITE hierarchy
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_9
LRR_5
LRR_6
LRRNT
Motif
Other DBs
NCBI-GeneID:
116938769
NCBI-ProteinID:
XP_032802275
EnsemblRapid:
ENSPMAG00000037456
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All DBs
Position
1:21925016..21942195
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AA seq
624 aa
AA seq
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MASPLSALLLLALLALPAARDAAQDRVDDGGGYEDEEGEAVEEGEGVLPSPGQRQGSCPS
SCTCSPDGAVECAGAGLDSFPASLPADTQLLSLQNNQIEVVPIAALKRVPLLRTLNLQNN
LITSAGLPADGFMVLKELQYLYLANNKLTQTPGSLPASLVSADLAANFLTAISPGTFGGK
PDLRSVYLHNNRLTNAGIPRDAFLGSDAVETLILSSNSLTRAPLGLPPALQRLHLRNNKL
HSLSGGAFDQLRDLRELYLQHNQLNDRSVDAKTFTHSRRLEYLDLSSNNLTLVPRGLPAR
LVILHLERNAIAALDSQGLGRLRSLEYLLVHSNRVRAHAVGAAAFRNLRRLHTLHLYSNE
LNRVPRSLPAHIKVLMLLHNTIHEIRAQDFAATPELAELNLSFNRLSTKRLHPRAFTRLS
KLASLDLTGNQLTHVPVGLPASLEVLRIQQNHVAVLGNGALSGLPALRELMLSDNALASK
TIAPNIWAQLPSLTTLDLSSNALTVVPSSLPASLEYLYLQNNRINSIPEGAFSTTPNIKG
IFLRYNRLPPHVKDMFMGLEELQVLDLTGNFDGTPEPGADDGEGGDGEGGDGDEEEGMGN
PQKELPQRRRAVERGTSVPRPQKT
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccgctgtcagctctgctgctcctcgccctgctggctctcccggccgctcgc
gacgccgcgcaggaccgcgtcgacgacggtggcggctacgaggatgaagagggggaggcg
gtggaggagggagagggcgtactccccagtccgggccagcgccagggctcgtgtccgtcc
agctgcacttgctcgcccgacggcgccgtggagtgtgcgggcgccgggcttgactccttc
cccgcctcgctgcctgcagacacccagctgctgtccttgcagaacaatcaaatcgaggtg
gttccgattgcagctttaaagagagttccactgctccgcaccttgaaccttcaaaacaac
ctcatcacgtctgcaggcctcccggccgacggcttcatggtcttgaaggagctacagtac
ctctacctggccaacaacaagctcacccagacccccggatccctcccggcctccctcgtc
agtgcggatttggccgcaaattttctcaccgcgatctcgcccgggaccttcggtggcaaa
cccgacctgcgctccgtttacctgcacaataaccgcctgacgaacgcggggatcccgcgg
gacgcgttcctcggctctgacgccgtggagactctgatcctgtcgagcaacagcctcacc
cgggcccctctcggcctcccgccggccctgcagagactgcacctgcggaataacaagctc
cattcgctctcggggggagcgttcgatcagctgagagacctgagagagctctacctgcag
cacaaccagctcaatgaccgcagcgtcgacgcaaagacattcactcactctcggcgcctc
gagtacctggacctgtcgagtaacaacctgacgctggtgccgcgcgggctgccggcccgg
ctcgtcatcctccacctggagcgcaacgccatcgcggcgctcgactcgcagggcctgggc
cgcctgcgctccctcgagtacctgctggtgcactcgaaccgcgtgcgtgctcacgctgtg
ggcgccgccgccttccgcaacctgcgccgcctgcacacgctgcacctctacagcaacgag
ctgaaccgcgtgccccgcagcctcccggcgcacatcaaggtgctgatgctgctccacaac
accattcacgagatccgcgcgcaggatttcgctgccacccccgagctggccgagttgaac
ctgagcttcaaccgcctgagcaccaagaggctgcacccgcgagccttcacgcgcctgtcc
aagctcgcctcgctcgacctcacgggcaatcagctgacgcacgtgcccgtcgggctgccc
gccagcctggaggttctgcggatccagcaaaaccacgtggcggtgctggggaatggggcc
ctgtcggggctacccgcactgcgggagctgatgctcagtgacaacgccctggcgagcaaa
accatcgcgccaaacatttgggcgcagctccccagcctcacgacgctggacctgtccagc
aacgccttgaccgtggtgccctcgtctctgcccgcgtcgctcgagtacctctacctgcag
aacaaccgcatcaacagcatccccgagggcgccttcagcaccacccccaacatcaagggc
atcttcctacgctacaatcgcttgcctccacacgtcaaggacatgttcatgggtctcgag
gagctccaggtgctcgacctgaccgggaactttgacggaactccggagcccggtgccgac
gatggcgaaggtggcgatggtgaaggtggcgatggcgatgaagaggaggggatggggaac
ccgcaaaaggaactccctcagagacgacgggcggtagagagagggacaagcgtgcctcgg
ccacagaagacttga
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