Petromyzon marinus (sea lamprey): 116938948
Help
Entry
116938948 CDS
T09614
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04010
MAPK signaling pathway
pmrn04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116938948
04020 Calcium signaling pathway
116938948
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmrn04040
]
116938948
Ion channels [BR:
pmrn04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116938948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
116938948
NCBI-ProteinID:
XP_032802600
UniProt:
A0AAJ7SNI0
LinkDB
All DBs
Position
5:complement(2236139..2423749)
Genome browser
AA seq
2113 aa
AA seq
DB search
MAKFGDEFSVRGSNGPHGGQGAHGGAGPHGGAGPHGGVGPHGGPGPQRVYKQTMAQRART
MALYNPTPVRQNCLTQNRSLFLFGEDNAVRKHARRLTEWPPFEYMILATIIANCIVLALE
QHLPNDDKTPLSLRLEETEPYFIAIFCLETAIKILALGFVFHKGSYLHSGWNIMDFVVVL
TGMLAMMGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGMLLFFAIL
MFAIIGLEFYVGKFHTTCMLNNTEYDSDPCGLEAPARLCPKDLECKGYWEGPNYGITQFD
NILFAGLTVFQCITMEGWVDVLYNTNDALGNTWNWLYFIPLIIIGSFFMLNLALGVLSGE
FAKERERVENRRAFLKLRRQQQLDRELNGYLEWICKAEEVMLEEEDKHAEDRSALDVLRR
ATVKRSRNDLINAEEGDGYFSDNSSVDSPFAHGSQRSGRHNGGATYFRRKEKHLRFSIRR
MVKSQAFYWGVLFMVGLNTLCVAIVHHDQPEELSVFLHYAEFVFLALFLLEVMLKIYGLG
PRPYFHSAFNCFDFGVIVGSMVEMAVSWLRPGSAFGISVLRALRLLRIFKVTKYWASLRN
LVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEEGTPPTNFDTFPAAILTVF
QILTGEDWNAVMYDGIKSQGGVKKGMMASCYFIVLTLFGNYTLLNVFLAIAVDNLANAQE
LTKDEEEEQEATNKKMLSIKKDAEEISPLSTVNTPSSRPLSVWEQHSTRLRRSSSDALRV
SCEQLYRCGKPYSELDPAAQRRMAYSLHIGPDSHSHLDRPLSVTPRPAAQCAYPDGREGW
KPSDISEESSAPQRKQGGSRCSGVAATAAATNGEGTDGAGLNHRRGRGHSKAANNQDSDP
ERGRSHGTTVEPGQERETETGRGRKRHSNHRHHHHHHHHNHHHHIRRYSPADDDVTGLQL
PRQPPLSPLPEGGVLDGPARPGESGRPDGAGGQGAPGGSEGPQGAGEQPRHHKKKHSTCK
RRHQPVTPESSMDAPIPEQAEDADNQLNNRRAVTETTAQPHTLGGTPSGQPQENSIPMNS
LGVQLEVLPEKKDDGGDVNGGGSGPKPMVPFSSMFIFSPTNPIRRACHYVVNLRYFEITI
LSVITMSSIALAAEDPVRTDSLHNNVLKYFDFVFTGVFTFEMVVKMVDLGLFLHRGSYFR
DLWNILDFIVVSGALVAFTFTSVSKESKGNNLNTIKSLRVLRVLRPLKTIKRLPKLKAVF
DCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGRFYYCTDESKEYEKDCRGYFLEYDRD
KVDPHPREWKRFDFHYDNVLWALLTLFTVSTGEGWPQVLKHSVDATYEERGPSPGYRMET
SIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMLDCTLEKNERACIDFAISARPHTRY
MPADRNSLRFRVWTFVVSPPFDYFIMAMIALNTVVLMMKFYGAPAAYDDSLKYLNIIFTI
VFSLECILKLVGFGFLNYFRDAWNVFDLVTVGGSVTDILVTELVQVNNFINLSFLRLFRA
ARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIGMLFFIYAIIGMQVFGNIALDDGYGI
NRHNNFRSFFQALMLLFRSATGEAWHEIMLACRSPRPCDELAGRHKSEECGSGFAYFYFV
SFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLEEFIRVWAEYDPSACGRIKHSDM
QAMLRHMAPPLGLGKRCPAHIAYKRLMRMHMPIEVDGTVHFTSTLVALIRTALEIKMASG
AKDQLAMDMELRKEIMTVWQHLSNKTLDLLVPPRTPTDLTVGKVNAVKMILDFYRVHRSK
QVGTEASVPHSRRKIGPTVVPAPVVAKSPQYKLECMQPLLAPTLSAESDCLLSLESQGRA
VSMPRLAGTTQETGPMKRSASAVGNGNRCELDDGVGGAGPKDRLGPAMRTAGGGSREGAG
PKEGTGLTEGTGPREGTGLKEGTGPREGTGRTKGTGPRDRTRPKEGVESKTATLEGVGKG
VGSGDRSHTAERTGNHRYRSRERHRQQQQQHHHHPQHYDTDVEAYRTCSPSLNHERQVST
GMYLCLFFCYHSL
NT seq
6342 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagtttggggacgagttctccgtgcgagggagcaacgggccccatggtggacag
ggagctcatggtggagcgggccctcatggcggggcgggccctcatggtggcgtgggcccc
catggcgggccgggcccccagcgcgtgtacaagcagacgatggcccagcgggcacgcacc
atggcgctctacaacccgacacccgtgcggcagaactgcctcacgcaaaaccgctcgctc
ttcctcttcggggaggacaacgcggtgcggaaacacgcgcgccgcctcaccgagtggcct
ccctttgagtacatgatcctggccacgatcatcgccaactgcatcgtcctggcgctggaa
cagcacctcccgaacgatgacaagacacctctctctttgcgcctggaggagacagagcca
tattttattgccatcttctgtctggagacggcgattaagatcctggccttaggattcgtg
ttccacaaagggtcttacttgcacagtggctggaacatcatggactttgtggtggtgctg
acaggtatgttggcgatgatgggcacagactttgacctgcgaactctgcgcgcagtgcgt
gtactgagaccattgaaacttgtatcaggaattcccagcctgcaggtggtgctgaagtct
attatgaaggcaatgatcccattgctgcagatcgggatgctcctgttctttgccatcctc
atgtttgccatcatcgggctggagttctacgtggggaagttccacaccacctgcatgctc
aacaacacagagtatgacagcgacccgtgtggcctggaggctccggctcgcctctgcccc
aaggacctcgagtgcaagggctattgggaaggccccaactacggcatcacgcagtttgac
aacatcctcttcgcgggactgaccgtgttccagtgcatcaccatggagggatgggtggac
gtcctctacaacaccaacgacgcgctgggcaacacgtggaactggctctacttcatcccc
ctcatcatcatcgggtccttcttcatgctcaacctcgccctgggagtcctgtctggggag
tttgccaaggagcgagagagagtggagaacaggagagcctttctgaagcttcgccggcaa
caacagctggatcgcgaactcaacggctacctcgagtggatctgcaaagctgaggaggtt
atgctggaagaggaagacaaacacgcagaggacaggtcagccctcgatgtgctccgcagg
gccacggtgaagcggagccgtaacgacctcatcaacgcggaggagggagacggctacttc
agcgacaactcgtccgtggactctccgtttgcgcacggcagccagcgcagcggacgccac
aacggcggcgccacctacttccgccgcaaggagaagcacctccgcttctccatccggcgc
atggtcaagtcgcaggccttctactggggcgtgctcttcatggtgggcctcaacacgctg
tgcgtcgccatcgtgcaccacgaccagcccgaggagctctccgtcttcctgcactacgcg
gagtttgtgttcctggcgctctttctcctggaggtgatgctcaagatctatgggctgggc
ccccgcccttacttccactcggccttcaactgcttcgactttggagtgattgtggggagc
atggtggagatggcggtgtcgtggttgcgcccgggatcggcgttcgggatcagcgtgctg
cgcgccctgcgtctcctgcgcatattcaaggtcaccaagtactgggcctcgctgcggaac
ctcgtcgtgtccctgctcaactccatgaagtcgatcatctctctcctctttctcctcttc
ctcttcatcgtcgtcttcgccctgctcggcatgcagctctttggcggacagttcaatttc
gaagagggcacacccccaaccaactttgatactttcccagcagccatcctcactgtgttc
cagattctaaccggggaggactggaatgccgtgatgtacgatggcatcaagtcccagggc
ggggtgaagaagggaatgatggcatcgtgctacttcatcgtcctcaccctctttgggaac
tacaccctgctcaacgtgttcctcgccattgccgtggacaacctcgcgaatgcccaggag
ctcaccaaggatgaagaggaggagcaggaagcgacgaacaagaagatgttgtcgattaaa
aaggacgccgaagagatcagccccttgtctaccgtgaacacacccagcagccgccctctg
tcggtgtgggagcaacactcgacccgcctgcgccgctccagctcagatgccctcagggtc
agctgcgagcagctgtacaggtgcgggaagccttacagcgagctggaccccgcggcccag
cggcggatggcctactcgctccacatcgggccggactcgcacagccacctggaccgcccg
ctcagcgtcacgccgcgccctgctgcccagtgtgcgtacccagacgggagagagggctgg
aagccaagtgacatttcggaggaatcgagcgcgccacagcggaagcagggcggctcccgg
tgctcgggtgtcgccgctaccgccgctgccacaaatggtgagggcacggacggcgccggg
ctcaaccatcgcagggggcgcggtcacagcaaagccgcgaacaaccaggactcggaccca
gagagaggacggagccatggcaccacggtggagcccggccaggaaagagagacggagaca
gggcggggaaggaaacgccactccaatcaccgacatcaccatcatcaccatcaccataat
caccaccatcacattcgcaggtacagcccggcagacgatgatgtcaccggattgcagtta
ccacggcaacccccgctgtccccactccccgagggcggggtgctggatgggccggcgagg
ccgggggagtcggggaggccggatggagctggtgggcagggggcaccaggtggctcggag
ggcccgcagggagccggagaacagccgagacatcacaagaaaaaacattccacctgcaag
aggaggcaccagcccgtgacgccggagagctccatggatgcccccatccctgagcaggcg
gaagacgccgacaaccagctcaacaaccgacgagccgtcaccgagacgactgcacagccg
cacacgctcggaggcacgcccagcggccagccacaggagaacagcatccccatgaacagc
ctcggcgttcagctggaggtcctgccagagaagaaagatgatggtggcgatgtcaacgga
ggaggaagtggtccaaaaccgatggtgccttttagctccatgttcatttttagtccaacc
aacccgattcggcgcgcgtgtcactacgtggtgaacctgcggtattttgagatcaccatc
ctgtccgtgatcaccatgagcagcatcgccctggcggccgaggaccccgtccgtaccgac
tctctgcacaataacgtgctcaagtactttgacttcgtattcaccggagtgttcaccttc
gagatggtggtcaagatggtcgacctcgggttgtttctgcaccgaggatcatactttcgt
gacctctggaacattttggacttcatcgtcgtcagcggagccctggtggccttcaccttc
acgagcgtttccaaagagagcaagggaaacaatctgaacacgattaagtctctgcgagtg
ctgcgcgtgctgcgccccctcaagaccatcaagcggctccccaagctcaaggcggtgttc
gactgcgtggtcaactcgctcaagaacgtgctgaacatcctcatcgtctacatgctcttc
atgttcatcttcgccgtcatcgctgtgcagctcttcaaaggccgattctactactgcaca
gacgagtccaaggagtacgagaaggattgccgtggctacttcttggagtacgaccgcgac
aaagtggaccctcacccgcgcgaatggaagcggttcgacttccactacgacaacgtcctg
tgggctctgctcacgctgttcacagtctccacgggggagggctggccacaggtcctgaag
cactccgtggacgccacgtacgaggagaggggccccagtcccggctaccgaatggagacc
tccatcttctacgtcgtctatttcgtcgtcttccccttcttcttcgtcaacatcttcgtg
gcgctcatcatcatcaccttccaggagcaaggggacaaggtcatgttggactgcactctg
gagaaaaacgagagggcgtgcatcgactttgcgatcagcgcgcgcccgcacacgcgctac
atgccggccgaccggaacagcctccgcttccgcgtgtggacgttcgtggtgtcgcccccc
tttgactacttcatcatggccatgatcgccctcaacaccgtcgtgctgatgatgaagttc
tacggggcgccggccgcctacgacgactcgttgaaatacctcaacattattttcaccatc
gttttttccctggagtgcatcctgaaactcgtcggcttcgggttcctgaattatttccgc
gacgcttggaatgtcttcgacctcgtcaccgtcggagggagcgtcacggacattttagtg
acggaactcgtgcaagtgaacaatttcatcaacctgagtttcctgcggctgttccgtgca
gcccgcctcatcaagctgctgcgccagggctacaccatccgcatcctgctgtggaccttc
gtgcagtccttcaaggctttgccgtatgtctgtctgctcattgggatgcttttcttcatc
tacgccatcatcggcatgcaggtgtttggcaatatagcactggatgacggttacgggatc
aaccgccataacaactttcgatcgttcttccaagcgctgatgcttctattcaggagtgcg
acgggcgaggcgtggcacgagatcatgctggcgtgccgctcgccacggccgtgcgacgag
ctcgccggccgccacaagagcgaggagtgtggcagcggattcgcctacttctacttcgtc
tccttcatattcttctgctccttcctgatgctgaacctgtttgtggcggtgatcatggac
aactttgaatacctcaccagagactcgtccatactcgggcctcaccacctggaggagttc
atacgcgtgtgggccgagtacgatccttccgcctgtggcaggatcaagcactcggacatg
caggccatgctacgtcacatggcccctccgctggggctgggcaagcgctgcccggcgcac
atcgcgtacaagcggttgatgcggatgcacatgcccatagaggtggacggaaccgtgcac
ttcacgtccacgctggtggcgctcatccgcacggccttggaaatcaagatggcgtccggg
gcaaaagaccaactggccatggacatggagctgaggaaagagatcatgacagtgtggcag
cacctgtccaacaaaaccctggatctgctggtgccgcccagaacgcctaccgacctgacg
gtggggaaggtgaacgccgtgaagatgattttggatttttaccgagtgcaccgaagcaag
caggtgggcacggaggcgagcgtgccgcactccaggcgtaagatcggacccaccgtggtg
cctgctcccgtcgttgccaagtctccgcaatacaagctggagtgtatgcaaccattgttg
gccccaaccctcagtgccgagagtgactgtctgctttccctggagagtcaggggcgagcc
gtgtccatgccgcggctagctgggaccacgcaggagacgggcccaatgaagagatcagcg
tctgccgttggaaatggaaaccgatgtgagttagatgacggtgtgggtggagcggggcct
aaggacaggctggggcctgctatgagaacagccggaggaggttcgcgagaaggagcaggc
ccgaaggaggggacaggcctgacagaagggacaggcccaagggaaggtacaggcctgaag
gaggggacaggcccacgggagggcacgggacgaaccaaggggacggggcccagggacagg
acaaggcccaaagagggtgtggagtctaagacagccactttagagggggtggggaaaggt
gtggggtctggagaccgctctcataccgcggagagaactggaaaccatcgctaccgatca
cgcgagcgacaccgtcaacagcagcagcagcatcatcatcatccccagcattacgacact
gacgtggaggcctacaggacgtgctcgcccagcctcaatcatgagagacaagtaagtacc
ggaatgtatctctgcctgttcttttgctaccattctctataa
DBGET
integrated database retrieval system
