Petromyzon marinus (sea lamprey): 116939255
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Entry
116939255 CDS
T09614
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116939255 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116939255 (PRPF8)
Spliceosome [BR:
pmrn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116939255 (PRPF8)
Complex C
U5 SnRNP specific factors
116939255 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
116939255
NCBI-ProteinID:
XP_032803329
UniProt:
A0AAJ7WMS1
LinkDB
All DBs
Position
5:17629210..17657510
Genome browser
AA seq
2333 aa
AA seq
DB search
MAGFGFAGVRGQVPGPGNATEFMSEEQLQEKARKWQQLQTKRYSEKRKFGFVDMQKEDMP
PEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQLRDVSVLYHI
TGAISFINEIPWIIEPVYISQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNV
MDVEPLEAVQMELDMEEDSAVREWFYDHQPLRDSRKFVNGTTYRRWQFTLPIMSTLYRLA
NQLLTDLVDGNYFYLFDLKAFFTSKALNLAIPGGPKFEPLVRDVNLQDEDWNEFNDINKI
IIRQQVRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHR
HATKNLDPVLDDEEDFELPDFVEPLLKETPLYSDNTANGIALLWAPRPFNLRSGRMRRAV
DVPLVKTWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHKPPKAQKKRYLFRSFKATKFF
QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGN
AFHLCREVLRLTKLIVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQI
RMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEG
RHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLGEAWRCWKA
NIPWKVPGLPAPIESMILRYVKAKADWWTNAAHYNRERIRRGATVDKTVCKKNLGRLTRL
YLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILA
LERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLY
SHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPSDSEPPPLLVYKWCQGINNL
QDVWDTAEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDM
NHTNSYGIIRGLQFASFVVQYYGLVLDLLVLGLHRASEMTGPPQMPNDFLSFQDVVTECA
HPIRLFCRYIEKIHIFFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRL
MKHDVNLGRAVFWDIKNRLPRSVTTVLWENSFVSVYSKDNPNLLFNMCGFECRILPKCRT
SYEEFTHRDGVWNLQNEITKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNK
WNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKEL
GGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDS
QRVWAEYALKRQEAMAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDF
KQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLF
WEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM
HGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKM
NSSCADILLFAAYKWNVSRPSLLADSKDVMDSSTTQKYWLDIQLRWGDYDSHDIERYARA
KFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSGYGNWFPGSKPLIQQAMAKIMKANPALYV
LRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP
INGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQII
VTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDD
WLKTISSYTAFSRLILILRALHVNNDRTKVILKPDKTTVTEPHHIWPTLTDEEWIKVEVA
LKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTAT
QTRTVNKHGDEIITSTTSNYETQTFASKTEWRVRAISATNLHLRTNHIYVSSDDIKETGF
TYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTVHLPNQ
LPQHEYLKEMEPLGWIHTQPNESPQLSPQDITTHAKIMADNPSWDGEKTIVITCSFTPGS
CSLTAYKLTPSGYEWGRSNTDKGNNPKGYLPSHYERVQMLLSDRFLAFFMVPSQGSWNYN
FMGVRHDANMKYDLQLANPREFYHEVHRPSHFLNFASIQDGETFNADREDAYA
NT seq
7002 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtttcggcttcgccggagtgcgaggccaggtacctgggccaggcaacgccaca
gagttcatgagcgaagagcagctacaggagaaggcccgaaaatggcagcagctgcagacg
aagcgctactcggagaagcgaaagttcggcttcgttgacatgcagaaggaggacatgcct
ccggagcacgtgcggaagatcatccgcgatcacggcgacatgaccaaccgcaagttccgc
cacgacaagcgcgtgtaccttggcgccctcaagtacatgccgcacgcggtgctcaagcta
ctggagaacatgcccatgccgtgggagcagctacgtgatgtgtcggtgctctaccacatc
acaggcgccatctccttcatcaacgaaatcccctggatcatcgagcccgtctacatctca
cagtggggcacgatgtggatcatgatgcggcgcgagaagcgcgatcgacggcacttcaag
cgcatgcgcttcccgccgttcgacgacgaggagccgccgctggactacgcagataacgtg
atggacgtggagccactggaggccgtgcagatggagctggacatggaggaggactctgcc
gtgagggaatggttctacgaccatcagccactaagggacagccgcaagtttgtgaatggc
accacgtaccggcggtggcagttcacactccccatcatgtcgacgctgtaccggctcgcc
aaccagcttctcaccgatctagtggacggaaactatttctacctgttcgacttgaaggca
ttcttcacctccaaggccctgaacctggccatccctggagggcccaagtttgagccactt
gtgcgtgacgtcaacctgcaggacgaggattggaacgagtttaatgacatcaacaagatc
atcattcggcaacaggtccgcaccgagtacaagatcgcgttcccctacctctacaacaac
ctgccgcaccacgtgcacctcacctggtaccacacacctaatgtggtgttcatcaagacg
gaagacccggacttgcccgccttctactttgatcctctgatcaacccgatctcgcacagg
catgccactaagaacctagaccccgtgctggacgacgaagaggactttgagttgccggat
tttgtggagccgctgctgaaggagacgccgctgtactctgacaacacggccaacggcatc
gcgctgctgtgggccccgcgccccttcaacctgcgctcggggcgtatgcgccgcgccgtg
gatgtccctctcgtcaaaacctggtaccgagagcactgccccgctgggcagcccgtgaag
gtgagggtttcctaccagaagcttctcaagtactacgtgctcaacgcactcaagcacaag
ccacccaaagctcagaagaagaggtacctcttccgctcgttcaaggcgaccaagtttttt
cagtcgaccaagctggactgggtggaggtgggactgcaggtgtgcaggcaggggtacaac
atgctcaacctgctcatccaccgcaagaacctcaactacctccatctggactacaacttc
aacctcaagcccgtcaagacgctcaccaccaaggagagaaagaagtctcgttttggcaat
gcgttccatctgtgccgtgaggtcctgcgtctcaccaagctgatcgtggacagccacgtg
cagtaccgcctcggcaacgtggacgccttccagctggcggacggcctgcagtacatcttc
gcccacgtgggccagctcaccggcatgtaccgctacaagtacaagctgatgcggcagatc
cgcatgtgcaaggacctcaagcacctcatctactaccgcttcaacacgggtccagtggga
aagggccctgggtgcggcttctgggcaccagggtggcgcgtgtggttgttcttcatgcgc
ggcatcaccccgctgctggagaggtggctgggaaacctgctcgcccgacagttcgagggg
cgacactccaagggcgttgccaagacggtgacgaaacagcgcgtggagtcgcacttcgac
ctggagctgcgcgccgcggtcatgcacgacatcctggacatgatgcctgagggcatcaaa
cagaacaaggcgcgcaccatcctgcagcacctgggcgaggcctggcgctgctggaaggcc
aacatcccgtggaaggtgcctggcctgccagcgcccatcgagagcatgatcctgcgctac
gtgaaggccaaggcagactggtggaccaacgcggcgcactacaaccgtgagcgcatccgt
cgcggcgccaccgtcgacaagaccgtctgcaagaagaacctgggccgtctcactcgcctc
tacctcaaggccgagcaggagcggcagcacaattacctcaaggatggaccgtacatcacg
gcggaggaggcggtggccatctacaccacgacggtgcactggctggagagccggcgcttt
tcgcccatccccttccctccgctgtcgtacaagcacgacaccaagctgctcatcctggcg
ctggagcggctcaaggaggcctacagcgtgaagtcgcgtctgaaccagtctcagcgcgag
gagttgggtctgatcgagcaggcttacgacaaccctcacgaggctctgtctcgcatcaag
cgtcacctgctcacacagagagccttcaaggaggtgggcatcgagttcatggacctgtac
tcccacctggtacccgtgtacgacgtggagccgctggagaagatcacggacgcctacctg
gaccagtacctttggtacgaggccgacaagcgccgcctcttcccgccctggatcaagccg
tccgactcggagccaccccctctgctcgtctacaagtggtgccagggcatcaacaacctg
caggatgtgtgggacacggcagaaggggagtgcaacgtgatgctggagtctcgtttcgag
aagatgtacgagaagatcgacctgacgctgctcaacaggctgctgcgccttatcgtggat
cacaacatcgccgattacatgacggccaagaacaacgtcgtcatcaactacaaggacatg
aaccacacgaactcgtacggcatcatccgcgggctccagttcgcctccttcgtggtgcag
tactacgggctggtgctggacctgctggtgctgggcctgcaccgcgccagcgagatgacg
gggcccccgcagatgcccaacgatttcctgtccttccaggacgtggtcaccgagtgcgcc
caccccatccgcctcttctgccgatacatcgagaagatccacatattcttccggttcaca
gcggaagaggcgcgcgacctgatccagcgctacctcacggagcaccccgaccccaacaac
gaaaacatcgtcggctacaacaacaagaagtgctggccgcgcgacgccaggatgcgtctc
atgaagcatgacgtcaacctgggccgggctgtgttctgggacatcaagaaccgactgcca
cgctccgtcaccacggtgctgtgggagaacagcttcgtgtcggtgtacagcaaggacaac
cccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgccgaacc
tcctacgaggagtttactcaccgcgacggcgtctggaacctgcagaatgagatcacaaag
gagcgcacggcacagtgcttcctgcgcgtcgacgacgagtcgatgcaacggttccacaac
cgcgtacgccagatcctcatggcttccggctccaccaccttcaccaagatcgtgaacaag
tggaacacagccctgatcgggctgatgacatacttccgcgaagcggtggtcaacacgcag
gagctgctggacctgctcgtcaagtgcgagaacaagatccagacgcgcatcaagatcggc
ctcaactccaagatgcccagtcgcttcccgcctgtcgtcttctacacgcccaaggagctg
ggaggcctgggcatgctctccatggggcacgtgctcatcccgcagtctgatttgaggtgg
tcgaagcagacggatgtgggcatcacccatttccgctcgggcatgagtcacgaggaggac
caactgatccccaacttgtaccgctacatccagccgtgggaaagcgagttcatcgactcg
cagcgcgtgtgggccgagtatgccctcaagcggcaggaggccatggcgcagaacaggcgt
ctgacgctggaagatttggaggactcatgggaccgcggcatcccgcgcatcaacacactc
ttccagaaggaccggcacacgctcgcctatgacaagggctggagggtgcgcacagacttc
aagcagtaccaggtgctgaagcagaacccgttctggtggacgcaccagcggcacgacggc
aagctctggaacctcaacaactaccgcacggacatgatccaagccctgggcggtgtggag
ggcattctggagcacacgctcttcaaggggacatacttccccacctgggagggtctcttc
tgggagaaggcgagcggctttgaggagtcgatgaagtacaagaagctgaccaacgcccag
cgctccggtctcaaccagatccccaaccgacgcttcaccctctggtggtcgcccaccatc
aaccgagccaacgtgtacgtgggcttccaggtgcagcttgacctgaccggcatcttcatg
cacggcaagattcccacgctcaagatctcgctcatccagattttccgcgcccatttgtgg
cagaagatccacgagagcgtggtgatggacctctgtcaggtgttcgaccaggagctggac
gcgctggagatagagacggtgcagaaggagacgatccacccgcgcaagtcctacaagatg
aactcgtcgtgcgccgacatcctgctgttcgccgcctacaagtggaacgtgtcccggccc
tcgctgctcgccgactccaaggacgtgatggacagctcgaccactcagaagtactggctg
gacatacagctgcgctggggcgattatgactctcacgacattgagcgctacgcacgcgcc
aagttcctggactacaccacggacaacatgagtatctacccgtcccccaccggcctgctc
attgccatagacttggcctacaacctgcacagtggctacggcaactggttcccgggcagc
aagccgctcatccagcaggcgatggccaagatcatgaaggcgaacccggccctctacgtg
ctgcgcgagcgcatccgcaagggcctgcagctgtactcgtccgagcccaccgagccgtac
ctctcctcgcagaactacggggagctcttctccaaccagatcatctggttcgtggatgac
accaacgtctacagagtcaccatccacaagacgttcgagggtaatttgaccacgaagccc
atcaacggagccatcttcatcttcaacccgagaaccggacagctcttcctcaagatcatc
cacacgtccgtgtgggccggacagaagcgtctcggtcagctggccaagtggaagacggcc
gaggaggtggctgcgttgattcgttcactgcccgtggaggagcagccgaagcagattatc
gtgacgcgcaagggcatgctggacccgctcgaggtgcatctcctcgacttccccaacatc
gtcatcaagggctccgagctgcagctgcccttccaggcctgcctcaaggtggagaagttt
ggtgacctcatcctgaaggccaccgagcctcagatggttctgttcaacctctacgacgac
tggctgaagaccatctcgtcgtacacggcgttctcccgtctcatcctgatcctgcgcgcg
ctgcacgtcaacaacgaccgcaccaaggtgatcctgaagccggacaagactacggtcacc
gagccgcaccacatctggcccacgctcaccgacgaggagtggatcaaggtggaggtggcc
ctcaaggacctcatccttgccgactacggaaagaaaaacaacgtgaacgtggcgtcactc
acacagtcggagatccgtgacatcatcttgggcatggagatctcggcgccgtctcagcag
cggcagcagatcgccgagatcgagaagcagacgaaggagcagtcgcagctcacggccacg
cagacgcgcaccgtcaacaagcacggcgacgagatcatcacgtccaccacgagcaactac
gagacgcagaccttcgcctccaagaccgagtggcgtgtccgcgccatctccgccacgaac
ttgcacctccgcacgaaccacatctacgtgtcgtcggatgacatcaaggagaccggcttc
acctacatcctgcccaagaacgtcctcaagaagttcatctgcatctcggacctgcgcgcc
cagatcgctggatacctgtacgggacgagccctcccgacaatccgcaggtcaaggagatc
cgctgcatcgtcatggtgccgcagtggggcactcaccagaccgtgcacctgcccaaccag
ctcccacagcacgagtacctcaaggagatggagcccctgggttggatccacactcagccc
aacgagtcgccacagctctcaccgcaggacatcaccacgcacgctaagatcatggccgac
aatccctcgtgggacggcgagaagaccattgtcatcacgtgcagcttcacgccgggctcc
tgcagcctcacggcgtacaagctgacgcccagcggctacgagtggggccgctccaacacg
gacaaggggaacaaccccaaggggtacctcccctcgcactacgagcgcgtgcagatgctg
ttgtccgaccgctttctcgcattcttcatggtaccgtcgcaaggctcctggaactacaac
ttcatgggcgtgcgtcacgatgcaaacatgaagtatgacctgcagttggcgaacccgcgc
gagttctaccacgaagtgcaccgtccctcccacttcctcaacttcgcctccatccaggac
ggagagacattcaacgccgaccgcgaggacgcctacgcctag
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integrated database retrieval system
