KEGG   Petromyzon marinus (sea lamprey): 116939737
Entry
116939737         CDS       T09614                                 
Name
(RefSeq) WD repeat-containing protein 7-like isoform X1
  KO
K24738  rabconnectin-3b
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    116939737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pmrn04131]
    116939737
Membrane trafficking [BR:pmrn04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    116939737
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML ANAPC4_WD40 WDR55 ASA1 Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd CFAP251_N WD40_MABP1-WDR62_1st Beta-prop_NOL10_N Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_IFT140_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd WDR72_alpha-sol PAC11 Beta-prop_SCAP Ge1_WD40 WDR90_beta-prop_4th Beta-prop_WDR19_1st WD_LRWD1 PEP5_VPS11_N TRM82_WD PD40 Beta-prop_Vps41 Tricorn_2nd eIF2A
Other DBs
NCBI-GeneID: 116939737
NCBI-ProteinID: XP_032804432
UniProt: A0AAJ7SS30
LinkDB
Position
1:complement(2995005..3089193)
AA seq 1472 aa
MSGQTLVIPIVLWGRQAPTHCISTLLLTEDHKTLVTGCYDGQVCLWDVTPDLQIIPRALL
FGHASAITCLSRASDGPEEVYIVSASENGEMCLSDVSDGRCLEFTKLACSHIAIHYYQST
SRHTQTGRLLCYGHYPEILVMDAGSLNILFTLVSKISPDWISAMTMAFSSQAQEDKVIAV
SVSGNLKVWNLKHISNKLQIGEILHEEESKPIHCTDCQDICFCSFTCRSLLLVSTSCWMV
FDAGDFSVLCSVCSEKGERWSGGKFLTADSVIIWTEEGAASVYRLPPSCLPESKHFRSDV
GKVIDSSPPKRLYRITCPPDEQPLICLPVMKYFHGKSSSSSSSQLLVQGDSMGQLTVWRI
PAEQAQHQSDVDMTRRVSLKSHFEVAVPRPAGVIDQLSVVPGCSKPLLVMSSIYIPASGQ
LVCGREDGSIIIVPATQTAAVQLLHGEHASRRGWPPHRTLRGHEGKVSSLLYPYQLSPRY
DQRWLLSGGVDFSVILWDIVSGEMLHTFCIHGGEILQLLVPPEGCTPRVQHCVCSVASDH
SVALLSLKERRCIMLASRHLFPVQTVKWRPLDDYLVVGCSDGSVYVWQMENGALDRCVMG
ISAVQILQGCDEAVPAALESASHPAVNLKQAMARRSLAALKHAAHHKLHSLATNLLASDV
NDKDALPKHSNTALLVQALRMSLGDPDIHVLFFDVEALVVQLLTEEASRPVPALVSPDTL
RRPSSFLDRGGLATSSFLAGKKAGDIFQQVKDTIKENIKEHLLDDDDDEDEQDQSHDGHM
ERRSHHSKPLTLQGSNLTMETAKLFMSCLHTWGLDQALDEICLSRLGLLKPHCPVSFGLV
SRGGHMSLMLPGWRRHHAPNIEQEKTLNSTLGVSKAVTTQHLLSIISLSNTLMSMTNATF
KDSTSKKPLHKPHRQGSHDGVKTKDDSPAINPVIQGQIKQADLSEASNYGLAVHSTVPVK
EGWSQLAALHCVMLPELLGPGSFRPPLLEMLVNRWQDRCLEVREAAQALLLAELRRIGHE
GRKEAIDTWAPHLPQYAENVHSPGQTGEVAPSALNSPEPLGMDLKGIEEEPDLGDEEISA
GFPSNASSQLRKAPASYEERRKQATAIVLLGVIGAEFGAEIEPAKLQPGKDSRPRSSSQV
PEGFGPTTSGTNNSLARHTCKALTHLLKPANMKLSAHTPIRRAAIDLIGRGFTVWEPYMD
VSAVLLGLLELSADSEKHLGNAMSGFPLTAAADTCRSARHALSLIATARPPAFITTIARE
VHKHTALAANSQAQPPVHSGLSRAKSEILRVMEILVEKMPNDVADLLVEVMDIIMYCLDA
STLKKKGLQECFPSICKFNMVSYCSTSYRMVVGARHGSVALYDIRTGKCQMIQGHKGPIT
ALAFAPDGRYLATYSSTDNRLAFWQMNTSLLGSLGMLNSAPQLRCIKAMEVPPLQPISPG
PMSALKLARLIWTTNRNLILMAHDGKEHRFQV
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgagtggacaaactctggtgattcccattgtgctctggggcagacaggcaccgacacac
tgcatctctacccttctacttactgaagaccacaagacattggtcacaggttgctatgat
ggtcaggtctgcctctgggatgttaccccagacctacagatcattccacgcgccctgctg
tttggtcatgcttcagccatcacttgtctaagcagggctagtgatgggcctgaagaagta
tacatcgtcagtgcatctgaaaacggagaaatgtgtctaagtgatgtaagtgatggacgt
tgccttgagttcacaaagcttgcctgctctcacatagcaatccactattatcagagcaca
agcagacacacacaaacaggcagattgttgtgttatggccactacccagaaatcctggtc
atggatgccggtagtctgaacatactcttcaccctcgtttccaagatttctccagactgg
atcagtgctatgacaatggctttttcttcacaagcacaagaggacaaagtgatcgctgtg
tctgtttcgggaaatcttaaagtctggaatctgaaacacatttctaataagttacagata
ggagagatattgcacgaggaagaatcaaagccaattcactgcacagactgccaagacatc
tgtttctgctccttcacatgccgatctttgttgctggtctccacatcatgttggatggtg
tttgacgcaggtgacttctcagtcctttgctcggtgtgctccgaaaaaggagagcggtgg
tcaggaggaaagtttttaactgcagatagtgtcatcatctggacggaggaaggagcagca
tctgtgtaccgcctgccacccagttgccttccggagagtaaacacttccgcagtgacgtt
gggaaggtcatcgacagttcacctcccaagcggctttatcggataacctgccctccggat
gaacagccattaatctgcctgccagtcatgaagtatttccatgggaagtcgtcgtcgtca
tcgtcgtcgcagctacttgtgcagggggactctatgggccagttgacagtttggcgcata
ccggcagaacaagcacaacatcaaagtgatgtggacatgaccagacgggtgagtttgaag
tctcactttgaggtggcagtgcctcgtccagcaggtgtcatagatcagttgagtgtggtt
ccaggatgcagcaaacctctgctggttatgtccagcatttatatccctgccagtggacag
ctcgtgtgtggccgtgaagatggaagcattatcattgtacctgcaacacagactgcggca
gtgcagctgctgcacggcgaacatgcatcacgcagaggctggccaccccaccgtacacta
cgtgggcacgagggcaaagtgagcagcctgctctacccatatcagctgtcccctcgctac
gaccaacgttggctgctctctgggggcgtggacttctctgtgatcctttgggatatcgtc
tctggagaaatgttgcacaccttctgcatccacggtggcgagatcctacagctgctcgtt
cctccagaaggatgcactccacgtgtgcagcactgcgtgtgttcggtggcaagcgaccac
tcggtggccttgctgagtctcaaggaaagacgctgcatcatgctggcgtcacgccacctc
ttccctgtgcaaaccgtcaagtggcgcccgcttgatgactacctggtggtcggctgctca
gatgggtccgtctacgtgtggcaaatggagaacggagcattggatcggtgtgtaatgggc
atcagtgcagtgcagatattacaaggctgtgatgaagctgttcctgcagccttggagagt
gcgagccacccagcagtaaacctgaagcaggccatggctcggcgcagcttggccgccctc
aagcacgcagcccaccacaagcttcacagcctggccaccaacctgcttgcgtctgatgtc
aatgacaaggatgcgctccctaaacactccaacacggcgctgctagttcaggcccttcgc
atgagtttgggagatccggacatccacgtgctattttttgacgtggaagctttggttgta
cagttgctgacagaagaggcatcacgcccagtccctgcgctggtttctccagacacgcta
cgtaggccgtccagtttcttggaccgtggaggtttggcaacatcctcttttcttgccggg
aagaaggccggtgacatatttcagcaagtcaaagacactatcaaggaaaatatcaaagag
catctgttggatgatgatgacgatgaggacgagcaagatcaaagtcatgatggacatatg
gaacgccggtctcaccactccaagcctctcactctacaaggctcaaatctgaccatggag
acagcgaagctgtttatgtcctgtctgcacacttggggactcgatcaagcacttgatgag
atctgtctctccaggcttggcttgcttaaacctcactgccctgtctcatttggactggtt
tcacgtgggggtcacatgtctctcatgctacctggctggaggcgtcaccatgctccaaat
attgagcaggagaagactttgaatagcacccttggtgtttcaaaagctgtaaccacacag
catctgctgtccatcatctcactgtccaacaccctcatgagcatgaccaatgccacattc
aaagacagcaccagcaagaagccgctacacaagcctcacagacagggaagccatgatggg
gtgaagaccaaggatgacagtcctgcaatcaacccagtcatccaaggacaaattaaacaa
gctgatctttctgaggcttcaaactatggcttggcagtgcatagcaccgtgccagtcaaa
gaagggtggagtcaactggctgccctgcactgtgtaatgttgccagaactactggggcct
gggagtttcaggccaccactgcttgaaatgctggtgaataggtggcaagatcgctgtttg
gaggttcgagaggcggcccaggcacttttattggcagagcttcgtcgtattggtcatgaa
gggaggaaggaggcaattgatacatgggccccgcaccttccgcagtatgccgagaacgtt
cactcgccaggacaaacgggagaagttgccccaagtgcactgaatagccccgagcctctg
ggaatggatctcaaggggattgaggaagaacccgacctcggtgatgaagaaatatctgca
ggttttccttcaaatgcaagttctcaattgcgaaaagcaccagcatcatatgaggagcgg
agaaagcaggcaactgcaattgtattgctgggtgtgattggagcagaatttggagctgaa
attgagcctgctaagcttcaaccaggcaaagattcacggccaaggtccagcagccaagtt
cctgaaggctttgggcctaccacgtcaggaacaaacaactccctcgctcgtcatacatgt
aaggcgttgactcatctactaaaaccagcgaacatgaagctgtctgcacacacgcctatc
agacgtgcagctatcgacctgatcggccgtggctttactgtgtgggagccatacatggat
gtgtcagctgttcttctcggtctgctggagcttagtgcagatagtgaaaagcatcttggc
aacgcaatgagtggatttccactgacagcagctgcagacacttgcagatcagcacggcat
gccctgtccctcatagccacagcacggcctccagcttttatcaccaccattgccagggag
gtgcacaaacatacagcattagcagccaactcgcaagcccagccacccgtccacagtggc
ctatctcgagcaaaaagcgagattctaagagtcatggagatcctcgtagagaagatgcca
aatgatgtggctgatcttctggtggaggtcatggacatcataatgtattgtttggatgct
tctacattaaagaagaagggcttgcaggagtgttttccatctatttgcaagttcaacatg
gtcagctactgcagcaccagctaccgcatggttgtcggtgcacgacacggctctgtggca
ctctacgatatccgcacgggaaagtgccagatgattcagggtcacaaaggaccaatcact
gcgctggcgtttgctccagatggccgttacttggcaacttactccagcaccgacaatcga
ctggccttttggcagatgaacacctctcttctcggaagcttgggcatgctaaactcggca
ccacagctgcgatgtatcaaagcgatggaggttccacccttgcagccaatttccccagga
ccaatgagtgcactgaagctggctcgcctcatatggaccaccaaccgaaacctcatactc
atggcccacgatggcaaagagcaccgcttccaagtgtaa

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