Petromyzon marinus (sea lamprey): 116939901
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Entry
116939901 CDS
T09614
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmrn03009
]
116939901 (IGHMBP2)
03012 Translation factors [BR:
pmrn03012
]
116939901 (IGHMBP2)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116939901 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
116939901 (IGHMBP2)
Ribosome biogenesis [BR:
pmrn03009
]
Eukaryotic type
Other ribosome biogenesis factors
116939901 (IGHMBP2)
Translation factors [BR:
pmrn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116939901 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
AAA_16
nSTAND3
ResIII
AAA_22
AAA
Flavi_DEAD
Helicase_RecD
DEAD
IstB_IS21
SLFN-g3_helicase
UvrD-helicase
NPHP3_N
SRP54
DnaB_C
ATPase
MeaB
AAA_25
Herpes_ori_bp
CbiA
bpMoxR
ABC_tran
UvrD_C_2
NTPase_1
PhoH
AAA_31
Motif
Other DBs
NCBI-GeneID:
116939901
NCBI-ProteinID:
XP_032804810
UniProt:
A0AAJ7SU32
LinkDB
All DBs
Position
7:7354907..7373306
Genome browser
AA seq
1081 aa
AA seq
DB search
MMSMESFIVKWQELLKEEREAEIEQAKSWQQGVPLKELQRRGICLLRLHLCNRRTGLYGR
QLLKFAARGGAPDSKLPSNDFGPGDIVGLYEGARDAVEAQLASGVVTRVSASAVTVAFDE
AHDALDLKHDGPYSLLKLANDVTYKRLKTALTALNNHHGGPSGQMISVLFGTSEPSAPLA
HTGQVEFLNTALDHSQREAVIFALAQREVAIIHGPPGTGKTTTVVEIIQQTVRRGEKVLA
CAPSNVAVDNLVERLACAGVRVLRLGHPARLLDSVRSRCLDAVLARGDDAGIVRDVRSDM
DKVHAKLRNGSERGERARLQAEMRSLRKELREREDTAMRNILQSADVILATTTGAWAGGP
LKLLPPAHFAVAVVDECGQAVEAASWLPLLQAPRCVLAGDHRQLPPTIVSQRAAEGGLAV
SLMERLVERLGSSAVRMLTVQYRMNAAIMDWASQHVYQGKLEAHPSVASHLLKDLPGVEA
TDETALALLLVDTAGCGLLETELAGEQSKGNAGEVDIVSAHVQALIDAGVKAEDIAVIAP
YNLQVDMLRQKLSDRHPELEIRSVDGFQGREKEAVILSLVRSNRKGEVGFLAEDRRINVA
VTRARRHLAVVCDSCTVRRHGFLGTLLDHMARRGETRTAYEYLQDIVPENFSHVKSTDEP
RTEGDKEGGGGARAKPQQIRDKTSGGRAPNSKVQAAVSAARDKRVDASVHKMPRGSAETA
TQIAPSVSSSSTLEELRKCVEGFVADPARNRLDFPASLNSHERMLVHQLAEELGLGHAST
GSGNQRHVAAWKPGEGAPAVAKPSVANGETRRGRSEAEQLDESSRKEPKKKASQKNSAER
QCLESESLRAGGLQKEKSLRRDISEKEPLQNNALVGGPRPLQASTNIKPASPASSRQQTA
ASGGVDLKSLHLERVEREHARQEEKLRQQKQQNEDPGKNGKTRTAHTKGEVGGKSGKTGV
VGEKAEEDFDAMIAAMVKANSRCAFAKCKTSVQTLSQHCQFCKSLYCLSHHIPEVHGCGE
QARAHARRAVLRDGVLYPGSGPRERASDPARRQQLQRRFEKKMNEMVSQRKPKQKDKDKD
K
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccatggagagctttattgtgaagtggcaggagctgttgaaggaggagagggaa
gctgagatagaacaagccaagtcatggcagcagggagtgcctctcaaggagctgcagcgc
cgtggcatctgccttctgcgcttacacctctgcaacaggcgtaccggcctctacggccgc
cagctgctgaaattcgctgcccggggcggtgcgcctgattctaagctccccagcaacgac
ttcggaccaggcgacatcgtgggcctgtacgagggcgcgcgcgacgccgtggaggcgcag
ctggcgtcgggcgtggttacgcgtgtctcggcgtcggccgtcacggtggcgtttgacgag
gcgcacgacgctctcgacctgaaacacgacgggccctacagcctgctcaagctggccaac
gacgtcacctacaagcgcctgaaaactgccctcacagccctcaataatcaccatggggga
ccgtcaggacagatgatctccgtattgtttgggacctccgagcccagtgctcctctggca
cacacaggacaggtggagtttctaaacacggctctcgaccactctcagcgcgaggccgtg
atcttcgccctggcccagcgggaggtggccatcatccacgggccgccgggcacgggcaaa
acgaccaccgtggtggaaatcatccagcagacagtgcggcgtggagagaaggtgcttgcg
tgcgcgccgtctaacgtcgccgtggataacctggtggagcgcttggcgtgcgcgggcgtg
cgagtgctgcggctcggccacccggcccgcctgctcgactcggtgcgcagccgctgcctg
gacgccgtgcttgcccgcggggacgacgcggggatcgtgcgcgacgtgcgcagcgacatg
gacaaggttcacgccaagttgagaaatggctcggagcgaggggagcgcgcgcggctccag
gcggaaatgaggagcctccgcaaggagctgcgggagcgcgaggacactgccatgaggaac
atcctgcagagtgctgacgtcatcctcgctacaaccacgggcgcgtgggctgggggaccg
ctgaagctactgcccccggcacactttgccgtggcggtcgtggacgagtgcgggcaggcc
gtggaggccgcgtcgtggctgccgctgctgcaggccccacgctgcgtgctcgctggcgac
caccgacagctcccgcccacgatcgtgtcccagagggcggctgagggcgggctggccgtg
agcctcatggagcgtctggttgagcggctgggctcaagtgccgtgcgtatgctcaccgtg
cagtaccgcatgaatgcggccatcatggactgggcctcacagcacgtctaccagggcaag
ctggaggcccacccctccgtggcctcacatctgctcaaggatttgcccggcgtggaggcg
acggatgagacggcactggcgctgctgctggtagacactgccgggtgtggcctcctcgag
acggagctggcgggcgagcagtcaaagggcaatgccggggaagttgacattgtctcggct
catgtgcaagctcttattgatgcgggagtgaaggcggaagacattgcagtgatcgctccc
tacaaccttcaggtggacatgctgagacagaagctgtccgatcgccacccggagctggag
attcgctcggtagatggcttccagggccgggagaaggaggcggtcatcctctctctcgtc
cgctcgaatcgcaaaggcgaggtgggcttcctggcggaagatcggcgcattaacgtggcg
gtgactcgcgcgcggaggcacctcgccgtggtgtgtgactcttgcaccgtgcggaggcac
ggcttcctgggcacgctgctcgaccacatggcgcgccgcggcgagacgagaactgcctac
gagtacctgcaggacatcgttccggaaaacttcagtcacgtcaagtccaccgacgagcct
cgcaccgaaggtgacaaagagggcggcggtggtgcgagggccaaacctcagcaaatccgt
gacaagaccagcggggggcgtgcgccaaactccaaagtacaggcggctgtgtccgcagct
cgggacaaacgagtggacgcttcagtgcataagatgccgagaggaagcgcagaaactgcg
acgcaaatagcgccttccgtgagctccagcagcaccctagaagagctgcgcaagtgtgtc
gaggggtttgtcgccgacccggcaagaaatcgacttgatttcccagcttcgctgaactcc
cacgagcgaatgctggttcatcagctggcggaggagctggggctgggccacgcgagcact
ggctcggggaaccagcgccacgtcgccgcgtggaaaccgggtgagggggcgcccgccgtc
gcgaaacccagtgtcgccaacggtgagacacgcaggggccgctcggaggccgaacaatta
gatgagtcctcgcggaaggagccaaagaaaaaggcgtctcagaaaaatagcgcagagagg
caatgcttggagagcgagtccctacgcgcggggggcttgcagaaagagaagtccttgcgc
agggatatctcggagaaagagcctttgcaaaataatgcattggtgggggggcctaggccc
ctgcaggcctccacgaacatcaaaccagcttctcccgcaagcagtcggcagcagaccgcc
gcgtcgggcggcgtcgacttgaaatcattgcatttggagcgcgtggagcgggagcatgcc
aggcaggaggagaagctcaggcagcagaagcagcagaatgaggaccctggcaagaatggg
aagacccggacagctcacaccaaaggagaagtgggaggaaaaagcggcaagacgggcgtc
gtgggcgagaaggcggaagaggattttgacgccatgattgccgccatggtgaaggcgaac
agcaggtgcgcgtttgccaagtgcaagacgtcggtgcagaccctcagccagcactgtcag
ttctgcaagagcctctactgcctgagccaccacattccggaggtgcacggctgtggcgag
caggcccgagcgcacgcgcgtcgtgcggtgctgcgcgatggcgttctctaccccggcagc
ggtccacgggagcgcgcctccgacccggcacgccgccagcagctgcagcgccgcttcgag
aagaagatgaacgagatggtgagccagcgcaagcccaagcaaaaggacaaggacaaggac
aagtag
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