Petromyzon marinus (sea lamprey): 116940001
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Entry
116940001 CDS
T09614
Symbol
POLD1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03030
DNA replication
pmrn03410
Base excision repair
pmrn03420
Nucleotide excision repair
pmrn03430
Mismatch repair
pmrn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116940001 (POLD1)
03410 Base excision repair
116940001 (POLD1)
03420 Nucleotide excision repair
116940001 (POLD1)
03430 Mismatch repair
116940001 (POLD1)
03440 Homologous recombination
116940001 (POLD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmrn03032
]
116940001 (POLD1)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116940001 (POLD1)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116940001 (POLD1)
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
116940001 (POLD1)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
116940001 (POLD1)
MMR (mismatch excision repair)
DNA polymerase delta complex
116940001 (POLD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
116940001
NCBI-ProteinID:
XP_032805075
UniProt:
A0AAJ7STR7
LinkDB
All DBs
Position
7:complement(11981578..12014891)
Genome browser
AA seq
1114 aa
AA seq
DB search
MDFKRKTGGGRPLPSSQGAMGGKRARSDWDDDCPTNFEEELAFMDDLEAEMALEEREEET
ASAAATAAVPVGKLLSSSVSNSKWLRPSLPKIDQKTESLVFQQIELDHYIGFHVSGMPGA
TQSQVPVVRMFGITNKGNSLCCHVHGFAPYFYVAAQTGFKSEHLVSFKRELNNAVIKNMR
SNKDNLSQAVLAVDICVKESIYGFHGNQKSNFLKVTVALPRLVAAAKRLLTQGFRFDSMP
EHSYLSFEANIDFEIRFMVDHKVVGCNWIEIPAGKYQLREESASGKLPGKMSLVQLEVDV
AVTDFVSHPTEGEWQAIAPLRVLSFDIECAGRKGIFPEPEKDPVIQISNMVLRQGERDPF
VRNVFTLNTCAPIVGCEVHSFQHEGEMLKAWAEFIRIVDPDIITGYNIQNFDLPYLLNRA
STLRVSTFSFLGRITSMRSVIKESSFQSKQMGRRDNKVINLEGRVTFDLLQVLLRDYKLR
SYTLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAMLPLRLLEKLMCVI
NYMEMARVTGVPLSYLLTRGQQIKVVSQLLRQAMKQDLLLPVVKPEGNEDYAGATVIEPI
KGYYTVPIATLDFSSLYPSIMMAHNLCYTTLLQKGVVENLGLSAEDFIKTPSGDHFVKSS
VRKGLLPEILENLLSARKKAKEELKNETDPFKQKVLDGRQLALKISANSVYGFTGAQVGK
LPCLEISQSVTGFGRQMIETTKNLVESRYTTENGQKADAKVIYGDTDSVMVKFSVKTVAE
GMEMGREAAAWVSSHFIPPIKLEFEKVYYPYLLINKKRYAGLYFSSSSETHDKMDCKGIE
TVRRDNSPLVANLINTCLQKILIDRDPDGAVDHAKDTISDLLCNRIDISQLVITKELTRT
ADEYAGKQAHVELAERMRKRDPGSAPNLGDRVPYVIVKATKGVAAYMKSEDPIYVLENNI
PIDTQYYLEQQLAKPLLRIFEPILGENKAESILLKGEHTRCKTVLTSKVGGLMAFAKKRS
TCIGCKAVLKNDGAVCDYCKKQESELYQKEVLHLNAMEEKFSRLWTQCQRCQGSLHEDVL
CTSRDCPIFYMRKKVQKDLDDQHKVVTRFGECTW
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaagcgtaagacggggggtgggcggccgctgccatcctcccagggcgccatg
gggggcaagcgcgcccgctcagattgggacgatgactgccccacgaacttcgaggaggag
ctcgccttcatggacgacctggaggcggagatggcgctggaggagcgcgaggaggagaca
gcgtcggcggcggccacagccgctgtgcccgtcggaaagctgctgtcatcgtctgtttct
aacagcaagtggctgcgtccatcgttacccaaaattgatcagaaaacagagtcgcttgtg
ttccagcaaatcgagctcgatcactacattggcttccatgtgtcggggatgccaggagcc
acccagagccaagtgccagtggttcgcatgtttggcatcactaacaagggcaacagcttg
tgctgccacgttcacggctttgcgccctacttctatgtggctgcccagaccgggtttaaa
tcggaacacttggtcagctttaagagggagcttaacaacgcggtgattaagaatatgcgg
tctaacaaggacaacttgagccaggcggtgctggctgttgacatttgcgtcaaggagagt
atatatggcttccacgggaatcagaagagcaacttcctgaaggtgacggtggctctgcct
cgtctcgttgcggctgccaagcggctgctcacgcagggctttcgcttcgactcgatgccc
gagcacagctacctgtcctttgaggccaacattgacttcgagattaggttcatggtggac
cataaagtagtggggtgtaactggatcgagattccagctgggaagtaccagctgcgtgag
gagtcagcttctgggaaactgcctggcaagatgtcccttgttcagctggaggtggacgta
gcggtgacggattttgtgagccacccgaccgagggggagtggcaggcgatcgcgccgctg
cgtgtgctcagcttcgacattgagtgcgcggggaggaaaggcatcttcccggagccggag
aaggacccggtgattcagatttccaacatggtcttacgtcagggggagcgcgatcccttt
gtgcggaacgtgttcacgctcaacacgtgtgcccccatcgtggggtgcgaggtgcacagc
ttccaacacgagggcgagatgctgaaggcatgggccgagttcatccgcatcgttgacccg
gacatcatcaccggctacaacatccagaactttgatttaccatacctgctcaacagggcc
agcacgctgcgggtgtcgacgttctctttcctgggccgaattacttcgatgcgctccgtc
atcaaggagtcgtccttccagtcgaagcagatggggcggagggacaacaaggtcatcaac
ttggagggccgtgtaacctttgacctcctacaggtgctgctgcgagactacaagctgcgc
tcgtacactctcaacgcggtcagcttccacttcctgcaggagcagaaggaggacgtgcag
cactccatcatcaccgatctgcagaatggcaacgagcagacgcgtcgccggctggccgtg
tactgcctgaaggatgcgatgctgccgctgcggcttctagagaagctcatgtgcgtcatc
aactacatggaaatggcgcgcgtgacgggcgtaccgctcagctacctgctgacccgaggg
cagcagatcaaggtcgtgtcacagctgctcagacaggcaatgaagcaggacctgttgtta
cccgtcgtgaaaccggaggggaacgaagattatgcaggagccacagtcattgaaccgatc
aaaggatactacacggtgcccatcgccacgctggacttctcgtcgctgtacccatccatc
atgatggctcacaacctgtgctacaccacgctgctgcagaaaggcgttgtcgagaatctg
gggctgtcggccgaggacttcatcaagaccccgtctggagaccactttgtgaagagctct
gtgcgcaaggggctcctgccagaaatcctggagaatcttctgtctgctcgaaagaaggcc
aaggaggagctgaagaacgagacagatccattcaagcagaaggttctggacggccgacaa
ctggcgctgaaaatcagtgccaactcggtgtacggcttcaccggtgcccaagtgggcaag
ctgccctgtctggagatctcacagagtgttacaggtttcggtcgtcagatgatcgagacg
accaagaacttggtggagtcgcgctacacgaccgaaaatggacaaaaggccgacgctaag
gtgatatacggcgacacggactcggtgatggtgaagttcagcgtgaagacggtggccgag
ggcatggaaatgggccgtgaggcggccgcctgggtctccagccacttcattccacccatc
aagctggagtttgagaaggtgtactacccgtacctgctgatcaacaagaagcgctacgca
ggcctctacttctcctccagctcggagacgcacgacaagatggactgcaagggcatcgag
acggtgcgcagagacaactccccgctcgtcgcaaacctcatcaacacctgcttgcagaag
atcctcatcgacagggacccggacggtgcggtggatcacgccaaggacaccatctcggac
ctgctatgcaaccgcatcgacatctcgcagctcgtgatcaccaaggagctgacgcgcacg
gcggacgagtacgcggggaagcaagcgcacgtggagctcgcagagagaatgaggaagcgc
gatccaggcagtgcccccaacctgggagaccgcgttccttatgttattgtcaaggcgacc
aaaggggtggcggcgtatatgaagtcagaggacccgatctacgtgctggagaacaacatc
cccatcgacacgcaatactacctggagcagcagctcgccaagcccctgctgcgaatattc
gagcccatcctcggggagaacaaggcggagagcatcctgctgaagggcgagcacacgcgc
tgcaagacggtgctcacgtccaaggtgggcggcctcatggcgttcgccaagaaacgctcc
acctgcatcggctgcaaagctgtgctgaagaacgacggggctgtgtgtgactactgcaag
aaacaggaatccgaactctaccagaaggaggttttacacttgaatgccatggaggagaag
ttttctcggttgtggacgcagtgccagcggtgtcagggcagcctgcatgaggatgttctg
tgtacaagccgagactgccctatcttctacatgcgcaagaaagttcagaaggacctggac
gaccagcacaaagtggtgaccaggtttggggaatgcacgtggtga
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