Petromyzon marinus (sea lamprey): 116940189
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Entry
116940189 CDS
T09614
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmrn00536
]
116940189
Glycosaminoglycan binding proteins [BR:
pmrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116940189
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116940189
NCBI-ProteinID:
XP_032805468
UniProt:
A0AAJ7STR3
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Position
8:complement(3372292..3640863)
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AA seq
905 aa
AA seq
DB search
MEAARTTSRGSSEGSSKGNSKGPACPLASSGGGPCSPQSPTHFVLALSWAILATACVALF
ARSETLGGRVSALERSLGALPAAGSAAVMQQQQQHWDGVLGPRLEALLNRRLEEELPRLR
RARETSTKLCSCPPGPPGRMGKRGRTGEPGKPGSPGRDGFPGSKGSPGFAGPPCRPHTDL
SLKGHVGQKGSPGEPGLSIIGPRGPPGQPGSRGFPGFPGPIGLDGKHGQPGTKGELGPAG
PKGDKGDQGDMGARGLPGLPPTHSHLLHSNQIHMKLVFPRTNYDFLAADQHIIKRRLIKG
DQGQAGPPGPPGPPGPIGPIGLPGPRGPAGDMGKDGPRGPLGLPGEPGQSGKDGSKGSPG
LPGLQGEKGDGGLPGRTGEKGESGLPGMMGWKGEVGPHGPPGPLGTKGERGYVGFPGKRG
EKGAQGFPGPMGPTGQAGPKGAPGSAAAGIKGDHGFPGLPGLPGQKGEAGLLGPPGFPGL
KGEAGGPGPLGRPGIPGRKGATGEKGEVSTASAFVAVKGEPGMPGLPGMPGLQGLPGVKG
DVGDGGASGLPGLPGLNGSKGERGVKGDMGELGSPGPIGPMGPKGAEGPKGDRGSTEVID
YNGDIQEALQAVKTLAFMGPPGPPGPPGQKGEMGLPGTPGLDGEKGPRGKTGDPGESGLP
GKEGPMGLKGDLGPPGLPGLMGPRGDKGELGLPGPSGLDGLTGADGMPGTPGLPGRHGEK
GDRGEKGDLGNVMSGLQGLPGPSGPPGPTGLQGFPGPKGDAGMDGLRGERGDTGDKGDRG
PMGLPGASGLDGLPGPPGPNGPAGPLGPAGPKGEKGEKGDFGSIGPHGPPGLPGRNGMPG
LQGTSGLRGDKGERGERGVRGKKGPKGDKGEQGAPGLDAPCPLGADGLPLPGCWQKGETP
WLIAK
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagcacggacgacgagtagaggatcctccgagggatcctccaagggaaactcc
aagggacccgcctgtcccctcgcctcctcgggtggcggcccatgctctccgcagtccccg
acgcacttcgtgctcgcgctgtcgtgggcgatcctcgcgaccgcgtgcgtggcgctgttc
gcgcgcagcgagacgctggggggccgggtgagcgccctcgagcgcagcctcggcgccctg
cccgcggccgggtccgccgcggtgatgcagcagcagcagcagcattgggacggcgtcctc
gggccgcgacttgaggcgcttctcaatcggaggctggaggaggaactcccgcgcctgcgg
agagcgagggagacgtcgacgaagctctgttcgtgccccccaggacctcccggcaggatg
ggcaagcgagggcgaaccggggagccagggaagccgggttctcccggaagagatggtttt
ccgggcagcaaagggagccccggcttcgcgggacccccgtgccgaccccacaccgacctc
tcattaaaggggcacgtcggacaaaaggggtcccctggggagccggggctatccatcatc
ggaccccgaggacccccggggcagcctggctcgcgaggtttcccaggatttccgggccca
attggactggatggaaagcacggtcagccgggtaccaaaggagagcttggccctgctggt
ccaaaaggagataagggcgaccagggtgacatgggcgcgaggggcttaccggggttgccg
cccacacacagccatcttctgcacagtaaccagatccacatgaagctggtgtttcctcga
acgaattacgactttctggcggccgaccagcacattattaagcggcggttgataaaggga
gaccagggccaggctgggccgcccggaccacccggccctccaggccccatcggtcccatc
ggcctgccaggacccagagggccggcgggcgatatggggaaagacggaccccgtggcccc
ttggggctgccgggtgagcccggtcaatctggcaaggatggctccaagggctcacctggg
ctgccggggcttcagggagagaagggagacggtggcctcccgggcaggaccggagagaag
ggcgagtccggcctgccaggcatgatgggatggaagggtgaggttggaccacacgggcca
cccggacctctaggcacgaagggggagaggggatatgtaggcttccccgggaagcgggga
gaaaagggtgcccaaggttttccaggccccatggggcccacaggtcaagcagggcccaag
ggggcgccaggatccgccgcggccggaatcaagggggatcatggttttcccggtctccct
gggctcccgggacagaagggcgaggcaggcttgcttgggccccctggctttccaggcctc
aagggggaagccggtggcccgggccccctgggccgccctggcatccccggacgcaaagga
gccacgggtgagaagggagaggtgagcaccgcctcggctttcgtcgctgtcaagggggaa
ccgggaatgcccggacttccgggtatgcccggactgcagggcctcccgggggtgaagggc
gatgtgggagacggcggcgcatccgggctgcccgggttacctggcctcaatggcagcaag
ggtgagcgtggcgtgaagggcgacatgggagaacttggatccccaggccccataggcccc
atgggtcccaagggcgcagaggggcccaagggcgatcgcggttccactgaggtcatcgac
tacaatggcgacatccaggaggcgcttcaggcagtgaaaacgctggccttcatgggacct
ccgggcccacccggcccacctggacagaagggtgaaatgggacttcctggcactccggga
ttggacggcgaaaagggcccacgcggcaagacaggggaccccggagagtcggggcttccc
ggcaaggaagggcccatggggcttaaaggggatttgggtccccctggcctcccggggctc
atgggacccaggggagacaagggggagctggggctgccagggccttcggggctggatggg
ctgacgggcgccgatgggatgccaggcactccgggcctacctggacgccatggagagaag
ggagatagaggggagaagggagacttgggcaacgtgatgtctggtctccagggtttgccc
ggccccagcggtcctcccgggcctacggggctgcaaggttttccaggacccaagggagac
gcggggatggacggattgcggggggaacggggtgacactggggacaaaggggaccggggc
cccatgggactcccaggcgcctcgggcttagacgggctgccgggaccaccggggccgaac
gggccagcggggccgctcgggccagcggggccaaagggagagaagggagagaaaggagac
tttggatccataggacctcacggacccccagggctacccggccggaacgggatgcctgga
ctccagggcacgtccggcctgaggggagacaagggggaacggggggagaggggagtccga
ggtaaaaagggcccaaagggcgataagggagagcagggcgcccccggattagacgcgccc
tgtcctttgggagcggacgggctgcccctccccggctgctggcagaaaggcgagacgccg
tggctcatcgccaagtag
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