Petromyzon marinus (sea lamprey): 116940243
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Entry
116940243 CDS
T09614
Symbol
HERC4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116940243 (HERC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmrn04121
]
116940243 (HERC4)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
116940243 (HERC4)
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
HECT type E3
116940243 (HERC4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
116940243
NCBI-ProteinID:
XP_032805642
UniProt:
A0AAJ7WQ35
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All DBs
Position
8:8649267..8710597
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AA seq
1060 aa
AA seq
DB search
MLCWGNTSFGQLGLGGIDEEIVKEPRRCTFFAGSSGGRAAGLRAVACGRRHTLFLMEDAT
VYSCGCNDLGQLGHDKTRKKLEQVSSLDTQTILAVACGDSHTLALNDKGQLFAWGQASEG
QLGLPGTDEIVRVPRHVKTLAEVPIVQVACGYHHSLALAKDGRLFTWGSNRYGQLGVGSF
GGSQRTAQLVHTLQGVPLARLAAGKAHSLALTCSGAVFAWGRNNFGQLGLSDEIDKCYPA
LLKSLRTQKVVYICCGEDHTAILTKEGGVFTFGAGGYGQLGHNSTNHEVNPRKVFELMGS
IVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVQGAWVPHNGPCPS
NVEKEECCIVKRIFAGGDQSFAHYFPPEDSVEPDDFRLAEPHMQVCVLSGPLLEKWASLP
SGRLPSDVVNEIDMIFSSPSCINGSFLAYGADEHYRTSGKVSGLDMNATRLAFNKLLQSP
CTQVLQQMAASLEKTLIPQLSTAPPDVEAMRLYLVLPEFPLMHDERNFSTLAISFAMAIT
KLGPTPAKVLENWWSVLTPPFFLKLVELYKAVVVFLLKLHKMGVPPAEEPIFQASLRSAL
VVLQILHRANTRTSVIQYDKFYIGEICDLVDIRRDYIAWIQQQAYRVDVNSAMAEEVPVT
LCSFPFVFDAQAKTTLLQTDAILQMQVAVDEATRRNFSSMFMPIDPENPCLVLMVRRDNI
VGDTLEMLRKQAKNLDFKKPLKVIFYGEDAVDAGGVRKEFFLLIMKDLLDPKYGLFKYYE
ESRLIWFSQQTFEDSNLFNLIGLICGLAIYNSTIVDLNFPLALYKKLLKVEPTLEDLKEL
MPDVGRSLQQLLDYPDDDVEETFCLNFTVAFENFGAMEVKELVPGGSDMVVNNANRQDFV
NAYVDYIFNKSVQQLFEAFHTGFHKVCGGKVLQLFQPSELMAMVIGNTDYDWAELEKNTE
YKGEYWAGHPTIKSFWEVFHELDLELKKKFLLFLTGSDRIPILGMKSLKIVIQPTGGGEQ
FLPVAHTCFNLLDLPKFSGKAQLREKLLQSITHYQGFSLA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgttgggggaacacgtcgttcgggcagctgggcctcggcggcatcgacgaggag
atcgtcaaagagccacgccgctgcaccttcttcgcgggcagcagcgggggccgtgccgcg
ggcctccgggcggtcgcctgcggccggaggcacacgcttttcctcatggaggacgccacc
gtctacagctgcggctgcaacgacctgggccagctggggcacgacaagactcgcaagaag
ctcgaacaggtgagttccttggacactcagaccattttggcggtggcgtgcggagattct
cacacgctcgccctcaatgacaagggacagctctttgcctggggccaggcatccgagggc
cagctcggtctgccaggaacggatgagatagtgcgtgtgcccaggcatgtgaagaccttg
gcagaggtaccaattgtgcaggtcgcctgcggataccatcactcactggcactcgcaaaa
gatggtcgcctcttcacttggggcagcaaccgctatgggcagcttggcgtgggcagcttc
gggggcagccagcggacagcgcagctcgtgcacacccttcagggcgtgccgctggcgcgc
ctggccgccggcaaggcccacagcctggcgctcacttgctccggcgccgtcttcgcctgg
ggacgaaacaactttgggcagctgggcctcagcgatgagatcgataagtgctaccctgct
ctactgaagtctctccgcacacagaaagttgtttatatctgctgtggagaggaccatacc
gctattcttactaaggagggcggggtgttcacgtttggcgcgggtggctacgggcagctg
ggccacaactccaccaaccacgaggtcaacccacgcaaggtgtttgagctcatgggcagc
atcgtcacgcagattgcgtgcggcaggcagcacacgctggcgttcgtgccgtcctctggg
aggatctactccttcggcctgggagggaacggtcagctgggaacgggctccaccagcaat
cgcaagagcccgttcacggtgcagggcgcctgggtgccacacaacgggccttgcccctcc
aacgttgaaaaagaagagtgctgcattgtaaagagaatatttgccggaggagatcaaagt
tttgcgcattactttcctccagaggactctgtggagccagatgacttccggctggcggag
ccccatatgcaggtgtgtgtgctgtctggccctctgctggagaagtgggcctccctgccc
agcggaaggctgccgtccgacgttgtcaatgagatagacatgatattctcctctccaagc
tgtatcaacggaagcttcttggcctatggggcagacgagcactacagaacgagtgggaag
gtgtcgggtctggacatgaatgccacgcgccttgccttcaacaagctcctgcagagccca
tgcacgcaggtcctgcagcagatggcagccagcctggagaagaccctgatcccccagctg
agcacggcccctccggacgtggaggccatgcggctctacctggtgctgcccgagttcccg
ctgatgcatgacgagcgtaacttctccacgctcgccatctccttcgccatggccatcacc
aagctgggccccacgcccgccaaggtgctcgagaactggtggagcgtgcttacgccaccc
ttctttctcaagctggtggagctctacaaggccgtggtggtgttcctcctcaagctgcac
aagatgggcgttcctcccgccgaggagccaatcttccaggcctcgctgcgctctgccctc
gtcgttctgcagatcctgcaccgggccaacacacggacgtcggtgatccagtacgacaag
ttttacatcggggagatctgcgatctggtggacatcaggagagactacatcgcgtggata
cagcagcaggcctacagagtggatgttaactctgcgatggcagaggaggtgccggtgacg
ttgtgcagcttcccgtttgtgttcgacgcacaggccaagaccacgcttctgcagacggat
gccatcctgcagatgcaggtcgccgtggacgaggcgacacgccgcaacttctccagcatg
ttcatgcccatcgaccccgagaacccctgcctcgtgctcatggtgcgcagggataacatc
gtgggcgacacgctggagatgctgcgcaagcaggcaaagaaccttgacttcaagaagcct
ctgaaggtgatcttctatggggaggatgccgtggatgcgggaggagtgaggaaggagttc
ttcctactcatcatgaaggacctcctggaccccaagtatgggctcttcaagtattatgag
gagtcgcgactcatctggttctcacaacagacgtttgaggacagcaacctgttcaactta
attggcctcatctgtggcctggccatctataactccaccattgtggacctcaactttcca
ctggcactctacaaaaagctgctcaaggtggagcccacgctggaagacctcaaggagctc
atgcccgacgtgggcaggagtctgcagcaactcctcgactaccccgacgatgacgtcgag
gaaaccttctgcctcaacttcacggtggcctttgagaacttcggagcgatggaagtaaag
gaactggtgcctggagggtcagacatggtggtgaacaatgccaacaggcaggactttgtg
aacgcctatgtcgactacatctttaacaagtcggtgcaacagctgttcgaggcgttccac
acgggctttcacaaggtgtgcgggggcaaggtgctacagctcttccagccgagcgagctc
atggctatggtgatcggcaacaccgactacgactgggctgagctggaaaagaacacggaa
tataagggagagtactgggctgggcatcccacaatcaaatccttttgggaggtgttccac
gagctggacctggagctcaagaagaagtttctcttgttcctgactggaagcgatcgcatt
cccatactcggtatgaagagcctgaagattgtgattcagccgacaggtggtggggagcag
tttctacccgtggctcacacctgttttaatcttctggacttgcccaagttctccggcaaa
gcacagctcagggaaaaactacttcagtccatcacgcattaccagggattcagcctggcg
taa
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