Petromyzon marinus (sea lamprey): 116940902
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Entry
116940902 CDS
T09614
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116940902 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
116940902 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116940902 (LSM5)
03041 Spliceosome [BR:
pmrn03041
]
116940902 (LSM5)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116940902 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
116940902 (LSM5)
Spliceosome [BR:
pmrn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116940902 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
116940902
NCBI-ProteinID:
XP_032807150
UniProt:
A0AAJ7SYJ9
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Position
10:6947187..6950779
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AA seq
88 aa
AA seq
DB search
MSTTNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFETTTEG
RRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaccaacccatcccagctgctgcctctagagctggtggacaagtgcattgga
tcccgcatccacattgtcatgaagaatgacaaggagatcgttggcaccttgctgggtttt
gatgactttgtcaatatggtgctggaagatgttacggagtttgagacaacaacagaaggc
agacgaataactaaactggatcaaattcttctcaatgggaacaatattacgatgttaatt
cctggaggagaggggcctgaagtctaa
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