KEGG   Petromyzon marinus (sea lamprey): 116941004
Entry
116941004         CDS       T09614                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7 isoform X1
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn03018  RNA degradation
pmrn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116941004
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116941004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmrn03019]
    116941004
   03041 Spliceosome [BR:pmrn03041]
    116941004
Messenger RNA biogenesis [BR:pmrn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116941004
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116941004
Spliceosome [BR:pmrn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116941004
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 116941004
NCBI-ProteinID: XP_032807428
UniProt: A0AAJ7WSU9
LinkDB
Position
1:complement(33234811..33240506)
AA seq 147 aa
MAARLNSNVKKGEAILDLTKYINKGVHVRFFGGRAVSGVLKGFDHLVNLVLDGATEYLRD
AEEPYRMSGDTRPLGLLVCRGTSISLLGPQDGFQAIDNPFPSPSSDTSSGTESSPGSTGT
WDQMLRGLEDTRLPREAEEIGHVCTRR
NT seq 444 nt   +upstreamnt  +downstreamnt
atggcggcgcgtttgaacagcaacgtgaagaagggtgaagccattctggacctcaccaaa
tacatcaacaagggcgtccacgtgaggtttttcgggggtcgtgccgtgagcggggtcctc
aaggggttcgaccacctggtgaacctcgtgttggacggggctaccgagtaccttcgagat
gcagaagagccgtaccgcatgtctggagacacacggccgttgggccttctggtttgtcgc
ggcacctccatcagcctgctgggcccccaggacggcttccaggccatcgacaaccccttt
ccgtcgcccagcagcgacaccagcagcggcacggagagcagccccggatccacggggacc
tgggatcagatgcttcgtggtcttgaggacactcggcttccgagggaagcggaggagatc
ggtcacgtttgcacgcgtcgttga

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