Petromyzon marinus (sea lamprey): 116941133
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Entry
116941133 CDS
T09614
Symbol
POLE
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03030
DNA replication
pmrn03410
Base excision repair
pmrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116941133 (POLE)
03410 Base excision repair
116941133 (POLE)
03420 Nucleotide excision repair
116941133 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmrn03032
]
116941133 (POLE)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116941133 (POLE)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116941133 (POLE)
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
116941133 (POLE)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
116941133 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
116941133
NCBI-ProteinID:
XP_032807748
UniProt:
A0AAJ7SY21
LinkDB
All DBs
Position
10:16236992..16320832
Genome browser
AA seq
2303 aa
AA seq
DB search
MPTLQNSGRLRADDGADDGGPQSAARRLERSRQVDEMDLKFGFVRLRDPGEHTGWLINMH
PTDILDEDKRLTSAVDYYFIREDGSRFKVALPFKPYFYVATKKGCEREVSSFLSRRFQGK
LSGIEMVAKEDLDLPNHLVGLKRTYIKLSFITTEDLIKVRKDVFPAIRKNREREKSNDAY
TSMLSSALSGGNLLAEDEGNSKKMSDQMENITDIREYDVPYHVRVAIDLKIHVAHWYNVR
IRGSAFPPEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMVDGQGYLI
TNREVVSEDIEDFEFTPKPEYEGPFTIFNEADEAGLLQRFFDHLHETKPNIFVTYNGDSF
DWPFVERRALAHGLDLLIETGFQKDSQGEYKATQALHMDCLRWVKRDSYLPVGSHNLKAA
AKAKLGYDPVELDPEEMCRMAAEEAQTLATYSVSDAVATYYMYMKYVHPFIFALCTIIPM
EPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQQEEFNRLTGDGHVLDSETYVGGHVEAL
ECGVFRSDIPCRFKMNPGVFEELMEKVETTLKHALEEEEKIPLDKVNNFSEVCEEVRSKL
RALQEVPSRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGASCQRRM
AWQWRGEFMPATRSEFHRIQQQLESEKFPSMFPGGPPRAFHTLSREDQAKYEKKRLADYC
HKAYKKVRVTRMEERMTTVCQRENSFYVDTVRAFRDRRYDFKGLHKVWKRKLGSAADSGD
AAEVKRCRNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTGANIIMQAR
ELVEQIGRPLELDTDGIWCALPSSFPENFIFHTSSAEKPKVTVSYPGAMLNILVKESFTN
HQYQELTEPRSLRYETRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAE
LKGFEVKRRGELQLIKIFQSSVFEAFLKGSNLQEVYAAVAKVADYWLDVLYSKAANMPDQ
ELFELIAENRSMSRKLEDYGAQKSTSISTARRLAEFLGDQMVKDAGLSCRFVISRRPEGA
PVTERAIPLAIFQAEPSVSKHYLRKWLKSPSQQDFDIRSILDWDYYIERLGSAIQKIITI
PAALQQVKNPVPRVRHPDWLHKKLLEKSDAYKQKKINELFTASEKRQVSGQQAGAASVED
MEDFGASQLTPLGPVPMATKRKRAEVESQDRESQDLELTQTWREILGPPPSIGTTAEEMA
TWIRFHKKKWEIQTRQRKDRSKRRRCGSGEGGPTTHGARGPLRGGGALNTGLGGFLMRAA
RSLLSTPWQIVQIAEGTQAGMFRVWCVVGTELHVVKLHIPRIFYVNQRVAKPDEGPNYRK
VNRVLPRSNPVLNLYEYTVAEELYQQHLNQINADLAAPHIEGVYETQVPLMFRALVQLGC
VCTVSRESARQQGALDVDTFQLEQLEMRSLAQYSYLEPGTIRHMYLYHCSQGSKALLGLF
IPTQRKASVFVVDTVRSNQMPNLGVVFTAERAALLASLGEELLPPPEHGFEVRVETDLKQ
AYRGLQRLLLSYKDSRKGPTLVAVESAWPSQRVRSAMPVLDDFPVVWVGGAGATSPAGPA
DDPPSLSVLDWQRQGGRHMVRAYLRVDSTLARMFDVARYLHVPVGNLPDDVEAFGCDLFF
ARHLRRNNHLLWLSATGRPDLGGKEADDGRLACDTRDAKSFHISCPSAYHAVCAELDIQS
LAVNAVLQSHHINDLEGGASGGVSFDSAPQASLADMMTSGTSSNTALASYDEAALCSNTF
RVLKGMVVGWVREISRFQNAYADNQVTHFHRWVSSPASLLYDPALHRTLHTAMKKLFLQL
ISEFKRLGSQIVYADFNRIIVCTRKHHIEDAIAYMEYVTRSINSREIFHSISISYSRCWE
TLLWLDSCNYAGIVGQLPPALLGEEAGIKTPAKKIRKRKPSDGSNVEIDYECSEEEDDGN
EDGGDDEEDALDESRLDNHWNLALFLPQAASCQTYFLTIVSAYIMAVYHSLQEEMKRNEP
GDTPVKRRGHGSQSTQAANKDGLPGTTSFCQEYVAGELTHNLFTITQKIQRRVTGRRNAD
GLSPLFPELPGSHLPLANPALEFAKAVCKVLSLDGAVALQVSKLRRDLLRLLDVGEFSSD
AEFRDPCLSLVLPELICHHCNYCRDIDLCREPALAQDGSVLPKWQCTNCSADYDVEQVQA
ALVETVQKKIMSHVLQDLVCEKCKGVKEANMPAFCDCAGDFQLAHPAQEFVEQLKVFRNI
ARHYAMPFLLETVNWILQGSSGE
NT seq
6912 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgctgcagaacagcggccgcctgcgagccgacgacggtgctgatgatggggga
ccccagtcggccgcgcggcggctggagcggagccgccaggtggacgagatggacctcaaa
ttcggttttgtgcgactgcgggatcccggagagcatacgggctggctcatcaacatgcac
ccgacggatatcttagatgaagacaagaggttgacgagtgcagttgactactacttcatt
cgagaagatgggagcagatttaaggtggctctgccgttcaagccctacttctatgtcgct
actaaaaagggatgcgagcgcgaggtgtcatcgttcctgtctcgccgttttcaagggaag
ctgtcaggcatagagatggtggccaaagaggacctggatctgcccaatcacctggtgggc
ttgaagcgcacctacatcaagctgagcttcataaccacggaggacctcatcaaggtgcgc
aaagacgtgttcccggcgatccgcaagaatcgcgagcgagagaaatccaacgatgcctac
acgagcatgctgtcaagtgcgctgtctggaggcaacttgctggcagaagatgagggcaat
tccaagaaaatgtctgaccagatggagaacatcacggacattcgggagtacgacgtcccc
tatcatgtgcgcgtggccatagacctcaagatacacgtggcacactggtacaacgtgcgg
attcggggcagtgcttttccccctgagatcacgcggagagatgatctggtggagcggccg
gacccagtggttctggcctttgacatcgagacgaccaagctgcccctgaagttccccgat
gctgagacagaccagatcatgatgatctcgtacatggttgatggccagggatacctcatc
accaacagggaggtcgtctcggaggacattgaggactttgagtttacaccaaagcccgaa
tatgaaggtcccttcaccatcttcaacgaggccgacgaggctggacttctgcagaggttt
tttgatcacctccacgaaaccaaaccaaacatcttcgtgacctacaacggcgactctttt
gactggccgtttgtggagcggcgtgccctcgcgcatggcctggatctgctcattgagacc
gggttccagaaggattcgcagggagagtacaaggccacgcaagcgctgcacatggactgt
ctacgctgggtgaagagggacagctacctgccggttggctcacacaacctcaaggcggcc
gccaaggcgaagctggggtacgaccccgttgagctggaccccgaggagatgtgtcgcatg
gcagctgaagaggcacagacgctggccacgtactcggtgtcggacgcggtggccacctac
tacatgtacatgaaatacgtgcacccgttcattttcgcgctctgcaccatcatccccatg
gagccggacgaggtgcttcggaagggctctggcactctgtgcgaggcactactcatggtg
caggcattccatgccaacatcgtgttccccaacaagcagcaggaggagttcaaccggcta
acgggcgatggccacgtgctggactcggagacctacgtagggggccatgtggaggccctg
gagtgcggcgtcttccgcagtgacatcccctgtcgcttcaagatgaacccaggtgtgttt
gaggagctcatggagaaggttgagaccaccctgaagcatgcgctggaggaggaggaaaag
attcctctggacaaggtcaacaacttctctgaggtgtgcgaggaggtgcggtccaagctt
cgtgctttgcaggaagtgccaagccggatcgagtgtccactcatttatcacctggacgta
ggggccatgtaccccaacatcatcctgaccaaccgcctgcagccgtccgccatggtggac
gaggcgacgtgtgcagcctgtgacttcaacaagccaggtgccagctgccagcgtcgcatg
gcttggcagtggcgcggggagttcatgccagccactcggagcgagtttcaccgcatccag
cagcagctggagagtgaaaaattcccatccatgttccctggtggacctccgcgagccttc
cacactctgtcccgggaggaccaagccaagtacgagaagaagcgccttgcagattactgc
cacaaggcctacaagaaggtgcgggtgacgcgcatggaagagcgcatgaccaccgtgtgc
cagcgtgagaactccttctatgtggacacggtgcgtgcgttccgagatcgccgctacgat
ttcaagggccttcacaaggtctggaagcgcaagctgggcagtgccgcggacagcggtgac
gccgcggaggttaaacgctgccgcaacatggagatcctgtacgactctctgcagctggca
cacaagtgcatcctcaactccttctacggatacgtcatgcgcaaaggggcacgttggtat
tcgatggagatggccgggattgtgtgccacactggagccaacattatcatgcaggcccgt
gagcttgtggaacagatcggccgcccgctggagctggacacggatgggatctggtgcgca
ctgcctagctccttccccgagaattttatcttccacacgagcagtgccgagaagcccaag
gtcacagtctcgtacccgggcgccatgctcaacatcctggtcaaggagagctttacaaac
caccagtaccaggagctcaccgagcccaggtctcttcgctacgagactcgctcggaaaat
tccatattcttcgaggtggatgggccgtacttagccatgatcctgccagcgtccaaagag
gagggcaagaaactgaagaagaggtatgcggtgttcaacgaggacggttctctggccgaa
ctcaaggggtttgaggtgaagcggcgcggagagctgcagctcatcaaaatctttcagtcg
tcggtgttcgaggccttcctcaagggctccaacttgcaggaggtctatgccgccgtggcc
aaggtggccgattactggcttgatgtgctctacagtaaggcagccaacatgccagaccag
gagctgtttgagctcatagcagagaaccgctccatgtcacgcaagctggaggattacggt
gcccagaagtcgacgtccatcagcacggcgcgccgccttgccgagttcctgggggaccag
atggtgaaggacgccggactgagttgccgattcgtgatttcgcgtcggccagagggagcc
ccggtcaccgagagggctatcccactggcgatattccaggctgagccgagtgtcagcaag
cactatctacgcaagtggctcaagagtccctctcaacaagactttgacatccgatcgata
ttggactgggattactacatagagcgactgggcagcgctatacagaagatcatcaccatt
ccagctgccctgcaacaggtgaagaacccagtcccgcgagtcagacacccggactggctc
cacaagaagctgctggagaagagtgacgcctacaaacagaagaagatcaacgagctcttc
acagcgtcggagaagcgacaggtgtcgggtcagcaggcgggtgccgccagtgtggaggac
atggaggacttcggagcgtcccaactgactccactgggccctgtgcccatggccaccaag
cgcaagcgggcggaggtggagagccaggaccgtgagtcccaggacctagagctcacgcag
acgtggagagagatcctggggccacccccttccatcggaaccaccgcggaggagatggcc
acctggatccgctttcacaagaagaagtgggagatccaaacacggcagcgcaaggatcgc
tccaagcgcaggcggtgcggctcgggtgaggggggcccaacaactcatggagcgaggggc
cccctgaggggggggggcgccctcaacaccggcctggggggcttcctgatgcgggcggca
cgctccctcctgagtactccctggcagatcgtgcagatcgcagagggcacgcaggcgggc
atgtttcgcgtgtggtgtgtggttggtaccgagctgcacgttgtgaagttgcacataccg
cgcatcttctacgtgaaccagcgcgttgccaagcccgatgaggggcccaactaccgcaag
gtgaaccgcgtgctgccacgttcaaacccggtgctcaacctgtacgagtacacagtggcc
gaggagctgtaccagcagcacttgaaccaaatcaacgctgacctcgccgcaccgcacatc
gagggtgtttacgagacgcaggtccccctgatgttccgcgcgttagtgcagctgggttgc
gtgtgcacggtgagccgcgagtcagcgcggcagcagggagccctcgacgttgacaccttc
cagctggagcagctggagatgaggtccctggcacagtactcctacctggagcccggtacg
attcgccacatgtacctttatcactgcagccaaggcagcaaggccctactaggcctcttc
atccccacacagaggaaggcctccgtgtttgtggtagacacggtccgcagtaaccaaatg
ccaaacctgggcgtggtgttcacggcggagcgtgcggcgttgctcgcgagcctgggtgag
gagctgctcccgcctccggagcacggcttcgaggtgcgcgtggagactgacctcaagcag
gcctaccgcggcctacaacgcctgctgctctcttacaaggactcgcgtaagggccccact
ctggttgcggtggagtcggcgtggccatcccagcgcgtgcgctccgctatgccggtgctc
gacgatttcccagtggtgtgggtcggcggcgccggcgcgacgagcccggccggcccagcg
gatgacccgcccagcctcagcgtcctcgactggcagaggcagggggggcggcacatggtg
cgcgcctacctgcgcgtcgactcaacccttgcacggatgttcgacgtggcacggtacctg
cacgtgccggtggggaaccttcctgacgacgtggaggcgtttggctgtgacctgttcttc
gcgcgtcacctacggcgtaacaatcacctgctgtggctctcggccacggggcggcctgac
ctgggtggcaaggaggcggatgacgggcggctggcgtgtgacacccgcgacgccaaatcc
ttccacatcagctgcccctcggcctaccacgcagtctgcgcggagttggacatccagtcg
ctggcggtgaacgccgtgctgcagtcgcaccacatcaacgacctcgagggtggcgcgagc
ggcggcgtgagcttcgactcggcgccgcaggcctcgctggccgacatgatgacatccggc
acgtcctccaacacggcgttggcgagctacgatgaggccgcgctgtgctccaacaccttt
cgcgtactcaagggcatggtggtcgggtgggtgcgggagatcagccgctttcagaacgcg
tacgccgacaaccaggtgacgcatttccaccgctgggtaagctccccggcatcgctgctc
tacgaccccgcgctccaccgcacgctgcacaccgccatgaagaagctctttctgcagctc
atctcggagttcaaacggcttggctcgcagattgtctacgctgacttcaaccgcatcatc
gtgtgcacacggaaacaccacatcgaggatgccatcgcctacatggagtatgtgacccgc
agcatcaactcacgggagatcttccactccatatccatctcctactcgcgctgctgggag
acgctgctctggctcgactcatgcaactacgcgggcatcgtggggcagctaccgcctgcc
ctgctgggggaggaggctggcataaagactcctgcaaaaaaaatacggaagaggaaacct
tcagatggatcaaatgtagaaatcgattatgaatgttccgaggaggaggatgatggaaat
gaagacggtggcgatgatgaagaggatgccttggatgagtctcgtcttgacaaccactgg
aacttggcgctgtttttgccgcaggccgcctcctgccagacgtacttccttaccatcgtg
agcgcatatatcatggcagtgtaccacagcctgcaggaggaaatgaagcgaaacgagccc
ggagacaccccggtgaagcggaggggacacgggagccagtccacacaggctgcaaacaag
gacggcttgcctggcacaacgtcgttctgtcaagagtacgttgccggggaacttacccac
aacctcttcaccatcacccagaagatccagcggcgtgtgacaggccgacggaacgcagat
ggcctgtcgcccctcttccctgagcttccggggtctcacctacccctggccaacccagct
ctcgagttcgccaaggccgtgtgtaaggttctgtcgctggatggtgcagtggcgctgcag
gtcagcaaactgcgcagggatctgctacgcttgctggacgtgggggagttttcgagtgac
gcagagttccgggatccttgtctctcgctagtgctgcctgaactcatctgccaccactgc
aactactgccgtgacatcgacctgtgcagggaaccagcactggcccaggatggatccgtg
cttcccaagtggcagtgcaccaactgctcggcagactacgacgtggagcaagtgcaagct
gctctggtggagaccgtgcagaagaagatcatgtcccacgtgctgcaggacctggtgtgt
gagaagtgcaagggggtgaaggaggccaatatgcctgcgttctgcgactgtgccggtgat
ttccagctcgcccaccctgcccaggagtttgtggagcagttgaaagtgttcagaaacatt
gcgagacactatgcgatgccgttcctgctggagacggtgaactggatattgcagggcagc
tcgggcgaatag
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integrated database retrieval system
