Petromyzon marinus (sea lamprey): 116941402
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Entry
116941402 CDS
T09614
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116941402 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116941402 (EXOSC1)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116941402 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116941402 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
116941402
NCBI-ProteinID:
XP_032808375
UniProt:
A0AAJ7SZF4
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All DBs
Position
11:15025391..15030282
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AA seq
194 aa
AA seq
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MAAPRACIPGERLCSAEECREGSGTYSRHGYLFASLAGYGRRRTDDSGLLPVMEVVRDTN
TQLVPEIGVIVTGKISSINPRFARCQILFVGSTPLKGIFRGTIRKEDVRATEKDKVEIYK
SFRPGDIVLARVISLGDSQSYLLSTAENELGVVVGHSEAGAQMVPISWCEMQCPKTHAKE
YRKVARVQPEYLQT
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccccagagcgtgcataccaggtgagcgcctgtgcagcgcggaggagtgcagg
gagggcagtggcacctactcccgccacgggtaccttttcgcgtccttggctgggtatggg
cggcgacgaaccgatgacagtggcttgctgccagtgatggaggtggtgcgcgacacgaac
acgcagctcgttcccgagatcggcgtcatcgttacgggaaagatcagcagcattaaccct
cgatttgcccggtgccagatcctctttgtggggtctacccctcttaagggcatcttccgg
gggaccatccggaaagaagacgttcgagcgacggaaaaagacaaggtggaaatctacaaa
tcctttcggcccggagacatcgtcctggcacgggtgatctcactgggcgactcgcaatcc
tacttgctgagcactgccgagaacgagctgggggtggtagtggggcacagcgaggcagga
gcgcaaatggtgccgatcagctggtgcgagatgcagtgccccaagacgcacgcgaaggaa
taccgcaaggtggcacgggtgcagcccgagtacctgcagacataa
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