Petromyzon marinus (sea lamprey): 116941604
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Entry
116941604 CDS
T09614
Name
(RefSeq) laminin subunit alpha-1-like isoform X1
KO
K05637
laminin, alpha 1/2
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04510
Focal adhesion
pmrn04512
ECM-receptor interaction
pmrn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116941604
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116941604
09142 Cell motility
04820 Cytoskeleton in muscle cells
116941604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Med29
Epimerase_2
Tropomyosin
Motif
Other DBs
NCBI-GeneID:
116941604
NCBI-ProteinID:
XP_032808699
EnsemblRapid:
ENSPMAG00000008054
LinkDB
All DBs
Position
12:complement(8244784..8377885)
Genome browser
AA seq
3169 aa
AA seq
DB search
MAHEGHTTGWEANTMPGHLCLPSADVSTPRRGPGPIKIVATVFGLGWESNSGLFPAILNL
ASNAKIHANATCGENSAEIFCKLVEHVPGRPNRNSQCRVCNLNSHIPDERHPITNANDGT
NGWWQSPSIQNGRKFHWVTITLDLQQVFQVAYVIVKAANSPRPGNWILERSLDGATYHPW
QYYSVSDSECLTRYGITPTVGNPVYRRDDEVICTSYYSRLVPLENGEIHTSLINGRPSAD
DPSPKLLDFTSARYIRLRLQRIRTLNADLMTLSHRDPREVDPIVTRRYYYSIKDISVGGM
CICSGHASTCPWNEDTQKMECQCEHNTCGENCQHCCPGYNQRRWRPGTINNGNTCEKCNC
HGKTEDCYYDAEVDRTNRSLSVHGRFSGGGVCVNCSANTAGTNCETCRDGFYRPTGVSPN
DPYPCRLCQCDPQGSLSQVCIKDEKHADPERDLSPGQCLCRPGFAGERCERCAFAYRGYP
DCKPCLCSMAGGTNDDPCSEPCVCKERVEGEHCDRCRAGFYDLRPRNPRGCSACFCFGLS
SSCRSLPWGVTQVVDMRGWRVTDRQGLRKVKTFVEVDQVAVRNADVRRTLPALYYWLAPT
SYLGNKLTAYAGHLRYSVSYDIPVDSTDSEMISDVDVIIEGNGQALSSGSLGLMLQPFEE
QTLSLRLLPENFFDFRSNAPVSRDALMTALANVTRLQIRASYSSVKQAVYRLSAVSLDVA
SPDAAVGSPAALDVEQCHCPHGYAGTSCESCMRGHRRVDGTLHGGRCEPCRCHGHADDCD
DLSGDCMLPLSGCRHNTMGPHCELCRPGFYGNATRGTADDCLPCTCPLSIASNNFSPTCH
QDPRGVLTCDQCLPGYIGLRCERCADDFFGEPSSPGGSCRRCECNGNEEAWGGGRVCDAR
TGQCLRCRERTAGFHCERCADGFYGDATGTGGCQPCQCHPEGATAPQCDRINGQCPCRPS
VVGRTCEQCAIGFYGLSSGAGCSPCPCHPVGTAGVACSADGRCHCWPGVEGRSCDRCTSG
HYGFKEGGCTPCNCSHTNHHCDQETGRCLCPPNTEGTRCHRCIDDHWGVNPHAGCRACNC
SAAHSRGARCDEASGQCSCLDGYGGRTCGECAQGRWGYPACRPCECHPEGTRANTCPAPP
TGSLCGCDERTGQCACKENVGGTRCDACLPGTFGLNREDPRGCTACFCFGVSSVCRELQG
FVRMQVFMVEGQRSMPVVNQVGQRETMSGVRYQHPEMILHAGEVLKTLHHEPFYWKLPSQ
FTGPKLTAYGGKLRYTVYFEAEDGSGRSDREPQVLLRGGRNKELLIYRDMAPPRPGQRTQ
HQMDMTEHEWRYFNSVLDQPVSRADFMSILGGIGNIFIKASYGSRMTESRISEVSLEVAA
RGNGSSHLQAACQVEQCECPPGYSGLSCQECAPGFFRDVSARHVPGQPRLVLGPCIPCHC
NNHSASCDPESGRCQGCRHNTTGHHCDHCAPGYYGRVKGRPDDCTACACPKSNPNNFSPT
CTQVGVDDFRCDACRTGYTGQYCERCSPGYYGNPSLPGEPCRPCGCHGDGSLGGECHHAT
GQCACLPGVMGRACDQCQPRHVLVNKNCLSCNDDCTGLLLNDLDVLAVSVMSVNLTGLIP
APYSRLEEFANMTRTLGDQLKSQKPPSQMTDAATRGVADVIGEIDAFDSRATRVLEEARA
TEQQLRETQERAGALLASVRSALNAALELVGNVSRLRELAVGGEDGGGTVPRAFADMEHL
VAQIRAVSLARQRDVANKELGKSRELLDKVKQAFEQPRQANEGLAQDVSDLLWEVFNRLS
DLQRILNEAKEATTMADELNQSNNKSLVELKDKSSTLERNLNSTKEMISQGEKILGNVKQ
TIHEIDKLLKQAELDQERLDTAAPKLRDRVDATVMALREKGLIELVFRAENHSAAMQALA
AQLSRILDETKNQTFDATTALNAYGAIVQAVADAEETAQQADSVAGEALAQAAGPSGSLE
QAGRASLQLSSELLRETKDLNDKATGFSDRLAAIKMQVTNGEDKTKALARQLASALASLA
SLPNDTSRAMEGVTEAAKGASEVASGVLEETMDLNKKIMNVSEHLDRVAENERSANAFID
DSAKNIAEASDKLRDVEERAARLSKRMEPFGALQDNLGRNISVIKELINQARKQAASIKV
SVQSSTGDCVRTYRPEIPHGKLTYNSMVLHVKTSEPDNLLFYLGGSQNPDYMAVEMRRGR
VSLVWDVGSGPGRVEYPDLAINDGNWYRIEATRSLRVGALSIRAFKGDRGGVSQLPSRGT
SPEGNSAFDVDETTLLFIGGLTGGVKKADSVKATSFKGCMGEAFLDGRSVGLWNFREMEG
TCGGCEISPQAAEAEVSTQFDGEGFVPVERPIRWNSEVSIITFKFRTFSPNALLMYLATA
DKKDFLSIELVNGQVRVWYDLGSGPGNVTSDNKHNDGNWRSLKFSRSKQMGTLIVEDEAR
NVVNKKSRSQGASGGLNLSSMDLIYFGGLPDGVLPRGEVKSRTFTGCIKGVEISRSYFNL
LTFKNSIGVKKGCSLEHVHMASIESPGFVELPATTASLPPSSEISFSFSSTNASGLLLHA
AGEQSPRVVRKRRQSGVPYYAVYLLDGNLEVLFSTGDATRKIVKKSTGGAYSDGREHAVV
VSRRQRVVRMSVDDSSSRDANLGSDGEITVARLFVGGTSAGYSPPSSVPVHTYTGCVQNI
IVNGVLQDFAHSLNFDNVDIGRCRTSEPRWRATMQPTGRRAEGGSGRAVVVPELNRPQPG
RGLPTPPPHAAPNKPATTTAQMPVRCAVEAAASLEANSLQFGLKKDSHAVLTFDRDTVKR
RLVLQLSVRTVASDGLLLYMGSANNLAALQLIGGRPQFTFDLGKGVIKVTAAQLINDGIW
HTLRVERGKRKVDLSVDTRQRATTKLPSGSSNLEVERRLYLGGAPAGSPGIKRLGNVTHS
LAGCIGDFSLNGAKHSLSPATFLLNHVEGCYQNVEPGFYFQGTGYAMLAAGGYRVGTDLE
ISLEFRTTQLDGVLLAISSPRMDAVGIELVAGKVLFHADNGAGRFSAELSPLALTEAGSA
GTGAGHLCDGHWHRLEASKLKNRLVLKVDGAATEAASPHQSNSADTNDPVYVGGFREGVK
QHALTTQVPFRGCIRNLRFMKSHQIQPQIHLGEASDMMGVLPHSCPAQS
NT seq
9510 nt
NT seq
+upstream
nt +downstream
nt
atggcacacgaggggcacacgacggggtgggaagccaacaccatgcctggccacctttgt
ctccccagcgctgacgtttccacaccaaggagaggccctggaccgattaaaatagtcgcc
actgtttttggccttggatgggaatcgaactcaggcctcttcccggccatcctgaacttg
gcctccaatgccaagatccatgccaatgccacgtgtggtgagaacagcgccgagattttt
tgcaagctggtggagcacgtgccaggccggcccaaccgcaactcacagtgccgcgtctgc
aacttaaacagccacatccctgacgagcgccaccccattacaaacgcaaatgacggcacc
aacggctggtggcaaagcccgagcatacagaatggcagaaagtttcactgggtcaccatc
acgctggacctgcagcaggtgttccaggtggcgtacgtgatcgtgaaggcggccaactcc
ccgcggcccgggaactggatcctagagcgctctctggacggcgccacttaccatccatgg
cagtactactccgtgagcgacagcgagtgcctgacccgctacggcatcacgcccaccgtc
ggcaaccccgtgtaccggcgggacgacgaggtcatctgcacgtcctactactccaggctg
gtgccccttgagaatggcgagatccatacgtcgctgattaacgggcggccgagcgcggac
gacccctcgccgaagctgctggacttcacgtccgcgcgctacatccgcctgcggctccag
cggatccgcacgctcaacgccgacctgatgaccctgagccaccgcgacccacgggaggtc
gaccccattgtgacgcgacggtactactattccataaaggatatctccgtgggggggatg
tgcatctgctccgggcacgccagcacctgtccttggaacgaggacacacagaaaatggag
tgtcagtgcgagcacaacacgtgtggggagaactgccagcactgctgccctggctacaac
cagaggcgctggaggcccggcaccatcaacaatggcaacacctgcgaaaagtgcaactgc
catggcaagacggaagactgctactacgacgcggaggtcgaccgcaccaaccgaagcctc
agcgtccacggccgcttttccggcggcggcgtctgcgtcaactgcagcgccaacacggcc
ggcaccaactgcgagacttgccgagacggcttctaccggcccacgggggtgtcgccaaac
gacccatacccctgccgcttgtgccagtgtgacccgcaaggatctctcagccaagtgtgc
atcaaagatgaaaagcatgccgatcccgaaagagacctgtcacctgggcagtgtctctgc
aggcctggctttgccggcgagcgctgtgagcggtgtgcctttgcctatcgcggatacccc
gactgcaagccctgcctctgcagcatggcaggaggcactaacgacgacccctgcagcgag
ccctgtgtgtgtaaggagcgcgtggagggtgagcactgtgaccgatgcagggccggcttc
tacgacctgcggccgagaaacccgcgtggctgctccgcgtgcttctgcttcggcctctcc
agctcgtgccggagcctgccatggggcgtcactcaggtggtggacatgcgcggctggcgc
gtcacagaccggcagggactgcgcaaggtgaaaacctttgtggaggtggaccaggtcgcc
gtcaggaacgcggacgtgcgccgcacactgccggcattgtactactggctggcccccact
tcctacctgggcaacaagttgactgcgtacgctggccacctgcgctacagcgtgtcctac
gacatcccggtggacagcacggactcggaaatgatctcggacgtggacgtcatcatcgag
ggcaatggccaagccctcagctcgggctcgctgggtttgatgctgcagccattcgaagag
cagaccctctccctccgcctgctgccagagaacttttttgatttccgctccaatgctccc
gtgtcgcgcgacgccctcatgacggcgctggccaacgtgactcgcctccaaatccgtgcc
agctacagctcggtcaagcaggctgtgtaccggctgagcgccgtgtctctggacgtggcc
tcgccggatgcggcggtggggagtcccgcggcactcgacgtcgagcagtgccactgcccc
cacggctatgctgggacttcctgcgagtcgtgcatgcggggacaccggcgcgtggacggg
accctgcacggtgggcggtgcgagccctgccgttgccacggacacgccgacgactgcgat
gacctcagcggcgactgcatgctgcctctgagcggctgccgccacaacaccatggggccg
cactgcgaactctgccgcccgggcttctacggcaacgccacgcgcggcacggcagacgac
tgcctcccctgcacgtgccccctgtccatcgcctccaataatttcagcccgacctgccac
caggatccacgcggggtgctgacctgtgaccagtgtttaccaggatacattggcctccgc
tgtgagaggtgcgcggacgatttcttcggcgagccgagctccccgggcggctcgtgccgc
cgctgcgagtgcaacggcaacgaggaggcgtggggaggtggccgcgtgtgcgacgcgcgc
accggccagtgcctccgctgccgcgagcgcaccgccggcttccactgcgaacgctgcgcc
gacggattctacggggacgccaccggcacgggcggctgccagccttgccagtgtcacccc
gaaggagccaccgcccctcagtgcgaccgcatcaacgggcagtgtccgtgccgccccagc
gtggtcggccgaacgtgcgagcagtgcgcgatcggtttctacggcctgagctctggcgcc
ggttgctccccgtgcccctgccacccggtgggcacggcaggcgtcgcctgctctgccgac
gggaggtgccactgctggccgggcgtggaggggaggtcctgcgaccgctgcacctctggc
cactatggattcaaggagggcggctgcacaccatgcaactgttcgcacaccaaccaccat
tgcgaccaggagacgggacgctgcctgtgccccccaaacactgagggcacgcggtgccac
cgctgcatcgacgaccactggggtgtgaacccgcacgccgggtgtcgcgcgtgcaactgt
agcgccgcgcactcccgtggtgcacgatgcgacgaagcgagcgggcagtgctcctgcctc
gacgggtacgggggccgcacgtgcggggagtgcgcgcagggccgctgggggtacccagcg
tgccggccctgcgagtgccacccggagggcacgcgcgccaacacctgccccgcgccgccg
accggctcgctctgcggctgcgacgagcgcactggccagtgcgcctgtaaggagaatgtc
ggtgggacgaggtgcgacgcgtgcctgcctggcacgtttgggctgaaccgggaggaccca
cgcggctgcacagcctgcttctgtttcggcgtgtccagcgtgtgccgtgagctccagggc
tttgtcagaatgcaggtcttcatggtggagggacagcggtccatgccggtcgtcaaccag
gttgggcagagagagaccatgtctggcgtgcgctaccaacacccagagatgatcctgcat
gccggggaggtgctgaagacgctgcaccacgagccattctattggaaactgccctcgcaa
ttcactgggcccaagctcacggcttacgggggaaagctgcgctacacggtgtacttcgag
gccgaagatgggagcggccgttcagaccgagagccacaggtgctgctccgtggcgggcgc
aacaaggagcttctgatctaccgcgacatggcgccaccgcgccctgggcaacgtacgcag
caccagatggacatgacggagcacgagtggcgttacttcaactccgtcctcgatcagccc
gtgagccgcgccgacttcatgtccatcctcggcggcattgggaacatcttcatcaaggcc
tcctatggcagccgcatgaccgagagcagaatctcggaggtgtcgcttgaagtggcggcc
agggggaatgggtcgagccacctgcaggcagcgtgtcaggtggagcagtgcgagtgccct
cccggctacagcggcctctcctgtcaggaatgtgcaccagggttcttccgagacgtttca
gccagacacgttcctggacagccgaggctcgtactcggcccttgcatcccgtgccactgc
aacaaccacagcgcatcatgcgacccggagtctggacggtgtcagggctgtcggcacaac
acgacgggacatcactgcgaccactgtgccccggggtattatgggagggtcaaaggtcgc
cccgacgactgcactgcatgcgcctgcccgaaaagtaacccaaacaacttcagcccgacg
tgcacccaggttggcgtggacgacttccgttgtgacgcctgccgcaccggctacaccggg
cagtactgcgagcggtgctctcccggttactacggcaacccgtcgttgcccggcgagccc
tgccggccctgcggttgccacggcgacgggtccctgggtggcgagtgccatcacgcgacg
gggcagtgcgcgtgcctgccgggcgtgatgggccgtgcgtgcgatcagtgccagcccaga
cacgtgctggtcaacaagaactgcctgtcctgtaatgacgactgcacgggcttgcttctc
aacgacctggatgtgcttgctgtgagcgtgatgtccgtcaacctcaccggcctcatccct
gctccgtactcacgactcgaagagttcgcgaacatgacccgaacactcggggatcagctt
aaatcacagaagccaccttcccagatgacagatgctgctactcggggagtggctgatgtt
atcggagagatcgatgcctttgatagccgggccacacgggtgctggaggaggcgcgtgcg
accgagcagcagctgcgtgagacgcaggagcgcgctggcgcactgctggcgagcgtacgc
agcgccttgaacgccgctctggagctggtggggaacgtgagccgtctgcgcgagctggcg
gtaggcggcgaggatggcggcggcacggtgccgcgggcgttcgccgacatggagcacctc
gtcgctcagatccgcgccgtcagcctggcccggcagcgcgacgtcgccaacaaggagctc
gggaaatccagagagctgcttgacaaggtgaagcaggcctttgagcagcctcgtcaggca
aacgagggcttggcccaggacgtgtcggacctgctgtgggaggtcttcaaccgcctgtcg
gacctgcagaggatcctgaacgaggccaaggaagccaccaccatggccgatgaactcaac
cagagcaacaacaaaagcctggtcgagctgaaggataaaagttcaacgcttgaaagaaat
ttgaattcgaccaaggagatgatttcccagggggagaagattctcggcaacgtcaagcaa
acaattcatgaaattgataagctgcttaagcaagcggagctcgaccaggagcgtctggac
acggcggcgcccaaactgcgggaccgcgtggacgcgacggtgatggcgctgcgcgagaag
gggctcatcgagctcgtgttccgcgcggagaaccactcggccgccatgcaggcactggcc
gcacagctttcccgcattcttgatgagacaaagaaccagacatttgatgcgacaactgct
ctgaatgcgtacggggccattgttcaggcggtggcagacgcggaggaaactgctcaacag
gccgacagcgtggccggcgaggcgcttgctcaggccgcgggtccctctggctccctggag
caggctgggagggcgtccctgcagctgagcagtgagctgctccgagagacgaaggacctc
aatgacaaggccaccggcttttccgaccgcctggcggccattaaaatgcaggtgacaaac
ggcgaggacaagaccaaggctctcgcgcgacagctggcctccgcgctggcctctctggcc
tcgctgcctaatgacacaagccgcgccatggagggggtgacggaggctgccaagggcgcg
agcgaggtggcttcgggggttctggaggagacgatggacctcaacaagaagatcatgaac
gtgtcggaacaccttgacagggtggcggagaacgagcgctcagccaacgccttcatcgac
gactcggcgaagaacattgccgaggcgagcgacaagctgcgggacgtggaggagcgggcg
gcgcgcctctccaagcgcatggagcccttcggagcgctgcaggacaacctcgggcggaac
atctccgtcatcaaggagctcatcaaccaggcccgcaagcaggcggcctctatcaaggtc
tccgtgcagtccagcacgggcgactgcgtgcggacgtaccgccctgagatcccgcacggg
aagctcacgtacaactccatggtgctccacgtgaagacctcggagccagacaacctgctc
ttctacctgggaggctcccagaacccggactacatggcggtggagatgcggcgaggccgg
gtgagcctcgtgtgggacgttggctcggggcccggacgagtcgagtacccggacctcgcc
atcaacgacggcaactggtatcgcatcgaggcgaccaggtccctgagggtcggcgctctc
tccattcgggccttcaagggcgaccgaggcggagtgagccagctgcccagcagagggacg
tcgcccgagggaaattcggccttcgacgtggacgagaccactttgctcttcatcggaggc
ctcactggaggggtcaagaaggccgattcggtgaaggccacctcattcaagggctgcatg
ggagaggcattcctggatggccgctcggtcggcctgtggaacttccgtgagatggaaggc
acctgtggtggctgtgagatcagtccccaggcagccgaagcagaagtctccacacagttt
gacggcgagggcttcgtgccggtggagcggccaatccgctggaactccgaggtctccatc
atcaccttcaagttccgcaccttctcccccaacgccctgctcatgtacttggccaccgct
gacaagaaggacttcttgtccatcgagctggtgaacgggcaggtgcgcgtgtggtacgac
ctgggcagcggaccggggaacgtgaccagcgacaacaagcacaacgacggcaactggagg
agcctaaagttctcccgcagcaaacagatgggcacgctgatcgttgaggacgaagctcgc
aacgtggtgaacaaaaagagcaggtcgcagggcgcgtcgggaggtctcaatctctcctcc
atggatctcatttactttggcgggctccccgacggggtcctacccaggggcgaggtgaag
agccgaacgttcaccggatgcatcaagggtgtggagatctcgcgcagctacttcaatctg
ctcacctttaagaactccattggggtcaaaaagggctgctcactcgagcacgttcacatg
gcgagcatagagtcgcccgggttcgtggagctgccagcaaccaccgcatctcttccgccc
tcatccgagatctccttctcattctcctcgaccaacgcctcgggtctcctgcttcacgcg
gccggggagcagtcgccgagagtcgtccgcaagcggaggcagagcggcgtgccttactac
gccgtgtacctcctcgacgggaacctggaggtgctgttcagcaccggcgatgccacgcga
aagatcgtcaagaagtcgacgggcggtgcgtacagcgatggcagggagcacgcggtggtt
gtcagcaggcggcagcgggtggtgcgcatgtcggtggacgacagctcatcccgggacgca
aatctgggcagcgacggagagatcacggtggcccggctgttcgtgggagggacgtcggcg
ggatacagccctcccagcagtgttccagtgcacacgtacacgggctgtgtgcagaacatc
atcgtcaatggagtgctgcaagactttgcccactctctgaacttcgacaacgtggacatc
gggcggtgtcggacatcggagccgcggtggagggcgacgatgcagcccacggggaggagg
gccgaggggggctccgggcgggcggtagtggtccctgagctgaacaggccccagcccggt
agaggcttacccacacctcctcctcatgctgctccaaacaagcccgccaccaccacagct
caaatgccagtgcggtgcgctgtcgaagctgcggcttctctcgaagccaacagtctgcaa
ttcggcctgaagaaagacagccatgccgttctgaccttcgacagggacacagtgaaacgc
aggcttgtgctgcagctgagcgtgcggacagtggcgagcgatggactgctgctctacatg
gggagcgcgaacaacctcgcagcgttgcagctgattggtggacgcccgcagttcaccttt
gacttgggcaaaggggtcattaaggttacggcggcacaactaatcaacgacggaatttgg
catacgctgagggtcgagcgcggaaagcggaaggtggatctgagcgtggacacccggcag
cgcgccaccaccaagctacccagcggcagctccaacctggaagtggagaggaggctttac
ctgggcggggctcccgctggctcccccggcatcaagcgactgggcaacgtcacacacagc
ttggctggatgcatcggagacttctcactcaacggtgccaagcacagcctgagtccagcc
acgtttttgctgaaccatgtggagggctgctatcaaaacgtggagcctgggttttacttt
cagggaacgggatatgccatgctagcggcgggagggtaccgcgtgggcacggacctggag
atttcgctggagttccggacgacccagctggatggggtgctcctggccatcagcagccca
cgcatggatgccgtcggcatcgagctggttgctgggaaggtgctattccacgcagacaac
ggagccggccgcttctcagctgagctctctccgctggcattaacggaggcagggtccgct
ggcactggtgctggccacttgtgcgatggccactggcaccgtttggaggccagcaagctc
aagaaccgcctggtgctgaaggtggatggagccgcaacagaggccgccagtccacaccaa
tccaactcggccgacacgaatgaccccgtctacgttggcggcttccgagagggagtgaag
cagcatgcacttaccacccaagtgccattccggggctgcattcgcaaccttcgcttcatg
aagagccaccaaatccagccgcaaattcacctgggagaagcctcggacatgatgggcgtt
ctgcctcattcctgtccggctcaaagctag
DBGET
integrated database retrieval system
