KEGG   Petromyzon marinus (sea lamprey): 116941890
Entry
116941890         CDS       T09614                                 
Name
(RefSeq) RNA-binding protein MEX3B-like
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
pmrn  Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmrn03019]
    116941890
   04121 Ubiquitin system [BR:pmrn04121]
    116941890
Enzymes [BR:pmrn01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116941890
Messenger RNA biogenesis [BR:pmrn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     116941890
Ubiquitin system [BR:pmrn04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    116941890
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 zf-RING_2 zf-C3HC4 RING_XB3-XBAT31 Prok-RING_4 zf-RING_UBOX KH_KhpA-B zf-C3HC4_2 KH-I_KHDC4-BBP KH_DEAH11_2nd NNMT_PNMT_TEMT
Other DBs
NCBI-GeneID: 116941890
NCBI-ProteinID: XP_032809105
UniProt: A0AAJ7WT24
LinkDB
Position
13:5348028..5356201
AA seq 652 aa
MPSSLFADMKQRGGGSSSSGGSSGGSSSDELGVGGGGGGGGGGVGLGHRHLHPESFDERR
ALQIALDQLSLLGLDGVPGPGPGPAPTAAAAAAAVGAGDSSSSSNGGGGGGGEDVEVEME
DDEDDEGHHQQQSSVSHAALLLFGGGGGGGLGGVGVLDSGSCKRGHNTTECVAVPSSEHV
AEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVITGRQEDVAMAKREILSAAEHFSVIR
ASRNKPGALGLPSGGPVPGPPPPVPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQGTHTY
IVTPSRDKEPVFEVTGMPENVDRAREEIEAHIALRTGGLIEFNDENDFHVNGTDVGFDNG
GNGGGYQPGSLWIRPPRKPFSTNRNDSSSSLGSGGGSTSDSHLGGGSGGSGGSGGGGGSS
SSNGGRYSADFSPTSPFGSSGAFGFGDSLTSLSSEELLIESSSGTLEAGPTALLWAHFER
TNPLAVLGSLPGHLHGQGGGAAGLGGRHSVAAIITNGSRLSPTFGTDNGPLLDHPLARRA
RSDPLTQGLPKYGLSPPELADSCGSGNESDGSLGSGFGGTASGSPGEMADVGEGRAARDC
AVCRESAVTAALVPCGHNLFCMECASGICEKGEEPRCPVCLTTVTQAIRIFS
NT seq 1959 nt   +upstreamnt  +downstreamnt
atgccgagctcgcttttcgcagacatgaaacagcgaggaggcggcagcagcagcagcggc
ggcagcagcggcggcagcagcagcgatgagctgggcgtgggaggaggaggtggaggtggt
ggtggtggagtcggtctcggtcatcgccacctccaccccgaatcgttcgacgagcgccgg
gcgttgcagatcgccctggaccagctgagcctgctgggactcgacggggtcccgggacca
ggacctgggccggctccaacagcagcggcagcagcggcagctgtaggagctggtgacagc
agcagcagcagcaacggcggcggtggtggtggtggtgaagatgtagaggtggagatggaa
gatgatgaggatgatgagggtcatcatcagcagcagtcgtctgtgagccacgccgcgctg
ctgctgtttggagggggtggaggaggaggtctgggaggcgtcggagtcctggactcgggc
tcctgcaagcgaggccacaacaccacagagtgcgtggcggtgcccagctcggagcacgtc
gcagagatcgtgggcaggcagggttgcaagattaaggcgcttcgggcgaagaccaacacg
tacatcaagactcccgtgcgaggcgaggagccggtgttcgtcatcacggggcgtcaggag
gacgtggccatggccaaacgagaaattctctcggccgccgaacatttctcggtcatccgt
gcctcgcgcaacaagcccggggccctgggattgcccagcggggggcccgtgccgggcccc
ccgcccccggtgccaggccagaccaccatccaggtgcgcgtgccttaccgcgtcgtgggc
ctggtggtggggcccaagggcgccacgatcaagcgcatccagcagggtacgcacacgtac
atcgtgacgccgagccgagacaaggagcccgtgttcgaggtgacgggcatgcccgagaac
gtggaccgcgcgcgcgaggagatcgaggcgcacatcgccctacgcacgggcggcctcatc
gagttcaacgacgaaaacgacttccacgtgaacggcaccgacgtcggcttcgacaacggc
ggcaatggcggcggctaccaacccggcagcctgtggatccgcccgccgcgcaagccgttc
tccaccaaccgcaacgacagctccagctcgctgggtagcggcggcggctccaccagcgac
tcgcaccttggcggagggagcggcggcagcggcggcagcggcggcggcggcggaagcagc
agcagcaacggtggccgctacagtgccgacttcagcccaacgagcccgttcggcagcagc
ggggcctttggattcggagactcgctcacatcgctcagttccgaagagctgctcatcgag
tcgtcgtctggcacgttggaggcaggccccacggccctcctctgggcccactttgagcgc
accaacccgctcgcggtgctgggcagccttcccggccatttgcacgggcaaggtggtggc
gctgcagggctcgggggccggcactcggtcgcggccatcatcaccaatgggagccgcctg
tctcccaccttcggcacggataacggtccactgctggaccacccgctggcgcggcgcgcg
cgcagcgacccgctcacgcagggcctgcccaagtacgggctgagcccgcccgagttggcc
gacagctgcggcagcggcaacgagagcgacggcagcctgggctccggctttggcggcact
gcctcgggctccccgggcgagatggccgacgtgggcgagggccgggcggcccgcgactgc
gcggtgtgccgggagagcgcggtgacggccgccctcgtgccctgcggccacaatctgttc
tgcatggagtgtgcgagtggtatctgtgagaagggagaagagcccaggtgccctgtgtgc
ctcaccaccgttactcaggccatccgcatattctcgtaa

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