Petromyzon marinus (sea lamprey): 116941953
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Entry
116941953 CDS
T09614
Symbol
TAF1C
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116941953 (TAF1C)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116941953 (TAF1C)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
116941953
NCBI-ProteinID:
XP_032809270
UniProt:
A0AAJ7WT77
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All DBs
Position
13:complement(8355055..8372570)
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AA seq
1112 aa
AA seq
DB search
MERPRGYDLTAFPSSLFPTHYSTGPAADHRLTPGTWALLGPVQRQETPVDEVRSTGQQPR
WVSQRRHGVEWEPVEPVALPFLPPSEVCTIPEFMDERNEEMMGPRKREAYHAKSYKFIEQ
MSNFFMDHPRDAFLSMGKLLEPCFNFSNAKPKAGEQVTAGRMLSYRKENKREKIAHLLGD
ALWEVPHHVLADCLREELRERRAWERFDAACTGGCLHYHPPLGARKHGLLVYPSGSCMDT
LSFQTIAQKCEGKACRSSCIKTLKPSVKFHLAGGIRQISTSSVRQEVFVGVRSDYFCGLW
KTGGKRPLRPQCVEVVQLEEPATCLTVSPHIPGELLVASESGSVYLWVAQKSSLQCVRRE
TRNLHFDAESRWRWCHFTAHPRVITYADRTGVDATDARIGRAGNTSLFRIGEAARCQQGE
RVVLSQHLDPVNPFHFLVMTQYSAYLMDERLPILPMLRWNHGLSCPPLFAHATHGPGHGI
SSSTASGGQRQHLLLGTQRKHELLMLSYTGGGQEPCCTTSLPRKLACASEWLDHIRPLLP
RQKHLLRRRLESAGAGVTAIPHQGSCGRLTVLQLSVAGDIFYQTLRPGAPGTANAVDCAT
EPPSATHHAAPPDPAMLATPRRVFPPPSGGTEALDSRGDGSGSAVAESETGGGGVASDGS
ADLLRSEVKRCQRWASGFLLLQRRATGKLPPHRARSKQVKLFRHLHRRMPEKPPDFSSSV
VNLVRAELRAGVATGAEVAVTAGRGSTEEERSEEVQAQPSLQLLLPVLSLPQEEEPVLFP
KPVVDAEAKDELSSRLTAAWHGEWHEWWEEKLGIASKRRAQDARQRRRVKKLRGRRHRRL
QGSYSSSASEWATEFSETMSCSGKSFTSVDLFSESSHTNEVELDADILQGHFTDDTRVSA
VKGIDSSQHSLFEDDAHVAASNSRPSLLGASSQNLPSSILKKNPSKTAQHSLAETAVQDK
AELWTNTFFGESLSQTSQSSTPFFSRARRPAQASDLQSQSQKPLPPSLSSLQKEPSSSQH
LGPAPGDSLQREEEPSSGVDGKSQEGHAAVSRPASSRLLPFSFSSQPSGGSPMPWIVTSN
SQGSSSTPLPQRPSSQSVASLVKKKKRFTMGF
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcctcggggctacgatttgaccgcattcccatcgagcctcttccccacccac
tacagcacggggcccgcggcggaccatcgcctcacgcccggcacgtgggccctgcttggg
cccgtgcagaggcaggagaccccggtggatgaagtgcgctccacgggccagcagccgaga
tgggtctctcagagacgccacggagtcgagtgggaacccgtagagccagtggcgttgccg
ttcctgcctccgagtgaagtgtgcacaatcccagaattcatggacgagcggaatgaggaa
atgatggggccaagaaagagagaggcctaccatgctaaatcgtacaagttcatcgagcag
atgagcaactttttcatggatcatccccgtgatgcgttcctgtccatgggaaagctcctg
gagccctgtttcaacttcagcaatgccaagccaaaggctggggagcaggtgactgctgga
cgcatgttgagttacaggaaggagaataagcgtgagaagatcgctcacctcctgggcgac
gctctctgggaggtgccacaccacgtcttggctgactgcctccgtgaggagcttcgggag
cgccgggcatgggagcgtttcgatgcagcgtgcacgggcggttgcctccactaccacccg
ccattgggggctcgcaagcatgggctcctcgtttacccatcgggcagctgcatggacacc
ctctcatttcagacgattgcgcagaagtgcgaggggaaagcatgtcgatcgtcttgcatc
aagacgctaaaaccgtccgtgaagttccatctcgcaggaggcattcgtcagatcagtacc
agttctgttcgacaagaagtttttgttggtgttcggtcggattacttctgcgggctgtgg
aagaccggtggcaagcgtcccctgcggccgcagtgcgtcgaggtggtgcagctggaggaa
cccgcaacatgtttgaccgtcagcccccacatccccggcgagctgctggttgccagcgaa
agtggcagcgtctacctctgggtcgcgcaaaaaagcagcctgcagtgcgtgcggagggag
accaggaacctgcattttgatgcagaatctcggtggcgctggtgccacttcaccgctcac
ccacgcgtcatcacatacgccgaccgcacgggcgtggatgccaccgacgccaggatcggt
cgagcgggaaacacatcgctcttccggatcggcgaggcggccagatgccagcagggagaa
agagtcgtgctcagccagcacctggacccggttaaccctttccacttcttggtgatgaca
cagtactcggcgtacctcatggacgagcggctgcccattctgcccatgctgcgctggaac
cacggcctctcctgtcctcccctgttcgcgcacgccacgcatgggcccggccacggcatc
agcagcagcaccgcctccggggggcagcgccaacacctgctcctgggcacgcagaggaag
cacgagctgctgatgctgtcgtacacgggtggtggtcaagagccgtgctgcaccacctcg
ctgcctcgcaagctggcgtgtgcaagcgagtggctggatcacatccgaccactgctgcct
agacagaagcacctgctgcggcgcagactggaatccgcaggcgcaggggtgacggccatt
ccacaccagggcagctgtggccgcctcacggtgctgcagctctccgtagccggcgacatt
ttctaccaaacgctgcggcccggcgcccctggaaccgcgaatgctgtcgactgcgcgacc
gagccaccctccgcgacgcaccatgccgccccacctgacccagcgatgctggccacgcct
cgcagggtctttccgccaccgagcggcggcacggaggcgctcgattcaaggggcgacggg
agtggctcagcggtcgcagagagcgagacaggaggaggaggagttgcctctgatggaagt
gcggatcttctcagatcagaagtgaagcgctgccagcggtgggcttccggcttcctgttg
ctgcagcgacgggcgacaggcaaattgccgccgcaccgagccagaagcaaacaagtaaag
ctcttccgtcacctgcatcgccggatgcccgagaaaccgcctgactttagcagctccgtc
gtcaacctggtgcgagccgagctgcgagccggagtggcgacgggcgcggaggtcgctgtc
acggcaggcaggggcagcaccgaggaggagaggagcgaggaggtgcaggcgcagccttcg
ctgcagctgctgctgcctgtgctgtcactgccacaggaagaggaaccggtactattcccc
aagcccgtggtggacgcggaggcgaaggacgagctgagcagccgcctgacggcagcatgg
cacggcgagtggcatgagtggtgggaggagaagctgggcatagcgtccaagaggagggcg
caggacgctagacagcgccggagggtgaaaaaattgcgcggccgacgccaccgacgcctc
cagggcagctactcctcctccgcgtccgagtgggcgaccgaattctctgagaccatgagc
tgctctgggaagagctttacttcagttgaccttttctctgagtcatcgcacaccaatgag
gtagaattggatgctgacatcttgcaaggtcatttcacagatgacacccgagtctcagct
gtgaagggtatcgactcttcgcagcactctctctttgaggatgacgcacatgtagctgcc
tccaactcaagaccctccttgttgggggcatcgagccaaaaccttcccagctccatcttg
aagaagaacccttccaagacggctcagcactcgctcgcagagacagcagtacaggacaaa
gcagaactgtggacgaacacgttctttggagagagcctgtcgcagacgtcccagtcatcc
acacccttcttctcccgtgcgaggcggccggctcaagcctctgacctgcagagtcagtcc
caaaaaccgttgccgccttcgctcagttccctccagaaagagccctcctcgtcccagcac
ctcggaccagcgccgggcgacagcctgcagcgggaggaagagccctcgagtggcgtggac
ggcaaatcccaggagggtcatgccgctgtctcgcggccggcgagcagcaggctactgccg
tttagcttctcgtcccagccgtcaggaggctcccccatgccatggatcgtcacctcgaac
agccagggcagctcctcgacgccactgccacagaggccgtcctcgcagtcggtggcctcc
ctggtcaagaagaagaagaggttcaccatgggcttctga
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