Petromyzon marinus (sea lamprey): 116942673
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Entry
116942673 CDS
T09614
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 2-like isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmrn01009
]
116942673
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116942673
Protein phosphatases and associated proteins [BR:
pmrn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116942673
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
116942673
mRNA cycle factors
Stress granule specific factors
116942673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Motif
Other DBs
NCBI-GeneID:
116942673
NCBI-ProteinID:
XP_032810773
UniProt:
A0AAJ7T3Y7
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All DBs
Position
15:complement(12170487..12204618)
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AA seq
688 aa
AA seq
DB search
MAQVSVTAPALSVGAPLPSVAGDACGLEPTSPLLAPPAGQCPVTATTNAIGTIIDGMSSV
SLEENMANPKEKTPMCLVNELARYNKLQAQYKLVREEGPAHAKLFTVELALGEQTWEAEG
SSIKKAQHSAATRALAETALPRPPARPPKHNLGTNPVFMLPAGSITPTVELNGMAMKLGL
PVFYRHFDPPPMPGYRPNYNYRGMPHQRYHHPPMPRAFLVELQVGERKFTGEGRTRQAAR
HNAASNALKDLQSDPLPPKPAPDTQENGNEDEDEENDHDANKSEISQVFEIALKRNFPVN
FEVVRESGPPHMKSFVTRLSVGQFSAEEEGKSKKLSKKKAAAIVLAELFKLPPLPVVEKP
RPTLFKKKPKSIVKVSPEYSQGMNPISRLAQIQQAKKEREPDYTVVSERSLALRRREFIM
QVKVGDDCATGTGPSKKIAKRNAAETLLLQLGYKPSLPAASPDDKCQPQEGEKPVDTRKV
TFAEPASPNQKGILHLSADVYQQMEAARNRAGGPPPQQQQQHPAMGYGKKEPSWGGPGPM
HPHGLGNATATIPRELLMKGGSPTAEAMVKVPPVHMVHACQQLDYLAREQGFQVQYMDMQ
HGKDVMSTLTILPLQIAFHGVGSTVEAARDQAALNTLKQLSEQGLDALASKGKPDKYLPG
FEPKNSSVTAQHSEPPGHLDFQVNFNTM
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggtctcagtcacggccccggctctgtctgtgggtgcccccctcccctctgtg
gccggtgacgcgtgcggcctggagcccacaagcccactgctggccccgccggccggtcag
tgccccgtcacagccactaccaacgccatcggcaccatcattgacggcatgtcctctgta
tctctggaggaaaacatggcaaaccccaaagagaagaccccaatgtgtctggtgaatgag
ctggcccgctacaacaagctgcaggcccagtacaagctggtgcgggaggaggggcccgca
catgccaagttgttcacggtcgagctggcgctgggggagcagacatgggaggccgagggc
agcagcatcaagaaggcgcaacactcggctgccacgcgtgccctcgccgagacggcgctg
ccccggccgcccgctcgcccacccaagcacaaccttggcaccaacccagtttttatgctg
cccgcagggagcatcacacccaccgtggagctcaatgggatggccatgaagctgggcctg
cccgtgttctaccggcactttgacccgccgcccatgcccggatatcggccaaactacaac
taccgcggcatgccgcaccagaggtaccaccaccccccgatgccgcgcgccttcctggtg
gagctgcaggtgggcgagcgcaagttcacgggggagggccgtacgcggcaagccgcgcgc
cacaacgctgccagcaacgcgctcaaggaccttcaaagcgacccgctgcctcccaagcct
gcgcccgacacacaggagaatggaaacgaggatgaggatgaggagaacgaccacgacgcc
aacaagtcggagatcagccaggtgttcgagatcgcgctcaagaggaacttccccgtcaac
ttcgaggtggtgcgggagagcggccccccgcacatgaagagctttgtgacgaggctctcg
gtggggcagttctccgccgaggaggaaggcaagagcaagaagctgtccaagaagaaggcg
gccgctatcgtgctggccgagctgttcaagctaccacccctacccgtcgtggaaaaaccg
cggcccacgctcttcaagaagaaacccaagtcgatcgtgaaggtgagcccagagtacagc
cagggcatgaatcccatcagccggctcgcacagatccagcaggcgaagaaggagcgtgag
cccgactacacagtcgtctcggagcgcagcctggcactgcgtcgacgcgagttcatcatg
caggtgaaggtgggcgatgactgtgcgacgggcactggtcccagcaagaagatcgccaag
cgcaacgcggcggagacgctgctgctgcagctgggctacaagccctcgctgccggccgcc
tcgcccgatgacaagtgtcagccgcaagagggtgagaagccggtggatacacgcaaagtg
accttcgcggaaccagccagccccaaccaaaagggtatcctgcacctgtcagctgatgtc
taccagcagatggaggcagcacgaaaccgggctggcggtccccctccccagcagcagcag
cagcatcctgctatgggctacggcaagaaggagccgtcgtgggggggcccaggccccatg
cacccccacggcctaggaaacgccactgccaccattcccagggagctgctgatgaaaggc
ggctcacccacggcggaggccatggtgaaggtgccgcccgtccacatggtccacgcgtgc
cagcaactcgactacctggctcgtgagcaaggcttccaggtgcagtacatggacatgcag
catgggaaggatgtgatgagcacccttaccatcctgcccctacaaatagcgttccatggc
gtgggcagcactgtggaggcggcacgtgatcaggctgccctcaacacattgaagcagtta
tctgaacagggcctggatgctttggccagcaaaggaaaaccagacaagtatctgcctgga
ttcgaacccaagaactcatcggtgacagctcagcactctgagccacccggacacctcgat
tttcaggtcaattttaacacaatgtaa
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