Petromyzon marinus (sea lamprey): 116942872
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Entry
116942872 CDS
T09614
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03030
DNA replication
pmrn03410
Base excision repair
pmrn03420
Nucleotide excision repair
pmrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116942872 (RFC1)
03410 Base excision repair
116942872 (RFC1)
03420 Nucleotide excision repair
116942872 (RFC1)
03430 Mismatch repair
116942872 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmrn03032
]
116942872 (RFC1)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116942872 (RFC1)
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116942872 (RFC1)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116942872 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_30
PTCB-BRCT
AAA_33
RuvB_N
TIP49
AAA_14
AAA_16
AAA_17
Rad17
RNA_helicase
AAA_5
nSTAND3
BRCT_2
AAA_18
AAA_19
SKI
AAA_7
NTPase_1
Motif
Other DBs
NCBI-GeneID:
116942872
NCBI-ProteinID:
XP_032811160
UniProt:
A0AAJ7WV62
LinkDB
All DBs
Position
16:complement(6948425..6986764)
Genome browser
AA seq
1268 aa
AA seq
DB search
MDIRKFFAPQAAKLAASGNSSSSSGSGGGSRAAAKAKGKAPPVAKATKATTKAVTKPATK
AASGKRHKEETAFMVLVNPALSGVWTDQLKSRVRGKKANKSDDDGDDDDDDDIKGGTKNQ
KARKKRGIISDSDSDLEEIPPQKKSHSSASSTTKTSAATKTSKTSKTSKVVAISDSDEDS
SSSDMKKGKTKSASGKVPNGHARLPKSSPKNKPSEPRALSRSPRRGDKPQPAPAAATASR
RHVEEKKLSPVKLVPTSVSEYFGTTSVQRSNRTLVAKRKAGSDSTDESFSPSEPTSAQDD
VSKLEKQLHEDEEFARTLAMLDEEEVAPQHKKARVESLARSSKTPEKQPALRKRSPAKPT
KAAPPPLVKFEPRVAPKRSPFKAAPLSAVKLSPVKKEIDRSPSLKGTTVGSPARTGSTET
SPKSEKGLEDSEKKRQNVAAYRHYLSRDGPRALGSKEIPQGGENCLEGLTFVITGVLESL
EREEARSLVERYGGKVTGNVSKRTDYLVVGRDPGNSKLDKAESCRVKQVDEDGLLELIRT
RPGKKSKYTIAAETEAAKAKFAAKTFPSQPTKLSPDKLTKTSPEKPTKTSPDKPTSTSPD
KPTKEAGGTDRTSTVTRKQLFSAVEQQRRTERTETGWAGRVTGRGPSAETRSPRKGSGPE
VGGDSLLWVDRYRPQSLKNIIGQQGDQSPANKLLRWLRAWHSNHGGGSGGGRKAAPSVGR
FRFGGKDDGSGLKAALLSGPPGVGKTTTAALVCQELGLSFVELNASDRRSKNSMKNEVAT
CLRNTSIEGFYHGTAQTVSDRHVLLMDEVDGMAGNEDRGGMQELIALIKQSKVPVICMCN
DRNHPKIRSLANYCFDLRFPRPRVEQIKGAMMSVAFKEGLKIPPAAMQEIILAANQDIRQ
VLHNLCVWSAREKALTYDQAKSDATSAKKDLKMGPFDVARKVFIADEETERMSLIDKSDL
FFHDYSIAPLFVQENYVHVRPLAAGGNMKKHLTLLSKTADSIAQGDLIDRQIRSNQSWGL
LPTQAIFASVIPGELMRGYMSQFPSFPSWLGRHSTTGKNARILQELTMHMSLRTHACQRA
VNLEYLGALRNELARPLQTWGSEGVAQTLSLMDDYCLTKEDVDSLMEVSSYHGSTDPLAK
LDPKVKAAFTRAYNKESHLTPYSLAVGPKKGRRGPGGGGTNEEGEDFDGAEGDGAAAVPD
SASEHEDDMDISADAMIKQKKKPAKKASKETSSPSKAGTSSKAGTSSRAGASSRARARSR
AVKGKKIK
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggacatccgcaagtttttcgcaccgcaagctgcgaagctcgctgcaagtggcaacagc
agcagcagcagcggcagtggcggtggcagtcgagcggcggcaaaagcgaaaggcaaagct
ccgccggtggcaaaggcaacaaaggcgaccacgaaggcggtcacgaagccggccacgaaa
gctgccagtgggaagaggcacaaggaggagacggctttcatggtgcttgtcaaccctgct
cttagtggtgtgtggacagaccagctgaagagccgcgtccgtggaaagaaagccaacaaa
agtgatgacgacggcgatgatgatgatgatgacgacataaagggtggcacaaaaaatcag
aaggccagaaaaaagcgtggcatcatttcagactcggattcggatttggaggagattccc
ccgcaaaagaaaagccacagttctgcctcatccaccaccaagacctcggctgccaccaag
acctccaagacttccaagacaagcaaagtggtggccatctccgattctgatgaagacagt
tcctcttctgacatgaagaagggcaaaacgaaatcggcatccggcaaagtcccaaatggg
cacgcgcggctacccaaatcgagccccaagaataagccgagcgagccgagggctctttcg
cggtctccccgccgcggtgacaaaccccagccggcgcctgctgctgccacggcatcgcgc
cggcacgtggaggagaagaagctgtcgccggtgaagctggttcccacgtccgtgtcggaa
tacttcggcacgacctccgtgcagcgctccaaccgcacgctggtggccaagcgcaaagca
ggatcagacagcactgatgaatcgtttagccccagtgagccgacatctgcacaagatgac
gtttccaagctggagaagcagctgcacgaggatgaggaatttgcgcgcacgctcgccatg
ttggatgaggaggaagtcgctccgcagcacaagaaggctcgcgtggagtcacttgctcgc
agcagcaagacgccagaaaaacaacctgcactgaggaagaggtcgcccgcgaagccaacc
aaagcggctccaccaccgttggtgaaattcgagccaagagttgcacccaaaaggtcaccc
ttcaaagcggcacctctgtccgcggtgaagttatctccggttaagaaggaaattgaccgt
tctccgagtttgaagggtaccaccgtgggctctcctgccaggacgggcagcacggagacc
tcgcccaagtctgagaaaggcctggaagactctgagaagaaacggcagaacgtggctgca
tacagacactacctcagccgggatggtccgcgagcactcgggtcaaaggagatcccacag
ggaggggagaactgcctggagggactgacgttcgtgatcacgggcgtgctggagtcgctg
gagcgggaagaggctcgctcgctcgtcgagcgctatgggggcaaagtgacggggaacgtg
agcaagcgcaccgactacctggttgtcggccgcgaccccggcaattccaagctggacaag
gccgagagctgccgagtgaagcaggtggacgaggacgggctgcttgagttgatccgcaca
cgtcccggaaagaagagcaagtacaccatcgccgcagagacggaggctgccaaggctaaa
ttcgccgccaagacgtttcctagccagccgacaaagttgtctccggacaaactgaccaaa
acctcaccggagaaaccgaccaagacctctccggacaagccaactagcacatctccagac
aagcccacgaaggaggccggtggcaccgaccggacctcgaccgtgacccggaagcagctc
ttctccgctgtcgagcagcagcggagaacagagcggacggagactggctgggctgggagg
gtgacgggcagaggaccctcggctgagaccaggagccccaggaagggcagtggccccgaa
gtgggaggggacagcctgctgtgggtagaccgctacaggccacagtccctgaagaacatc
atcgggcaacagggtgaccagagcccggccaacaaactactacgctggctgcgtgcctgg
cacagcaaccacggaggaggaagtggcggtggaaggaaggccgcccctagcgtaggaagg
ttcaggttcggcgggaaggatgatggctctggtttaaaggctgcgctgctgtcaggacct
cccggcgtaggcaaaaccacaacggccgctctcgtgtgccaggagctgggcttgagtttc
gtggagctaaatgcgagtgaccgtcgcagcaagaacagcatgaagaatgaggtcgcgacc
tgcttgcgcaacaccagcattgaaggcttctaccacggcacggcgcagacagtgagcgac
cgccacgtgctattgatggacgaggtggacggcatggctgggaacgaggatcgggggggc
atgcaggagctcattgcactcatcaagcagagcaaagtgcccgtcatctgcatgtgcaac
gatcggaaccacccaaagattcgctcgctcgccaactactgcttcgacctccgcttccca
cgaccacgcgtcgagcagatcaagggagccatgatgtccgtggcattcaaggaaggcctc
aagatccctccggccgccatgcaggagatcatcctggcagcaaatcaggacatccggcag
gtgctgcacaacctgtgcgtgtggtcggcacgagagaaggccctcacgtacgaccaggcc
aagtctgacgccacaagtgccaaaaaggaccttaaaatgggccccttcgacgtggcgcgc
aaggtgttcattgctgacgaggagacggagcgcatgtcgctcattgacaagtccgacctc
ttcttccacgactactccatcgcgccgctctttgtgcaagagaactacgtgcatgtccgg
ccgctggccgcagggggcaacatgaagaagcaccttaccctgctgagcaagactgccgac
agcatcgctcagggggacctcatcgacaggcagattcgctccaatcagtcgtggggcctc
ctgcccacacaggccatttttgcgagcgtcatcccgggggagctcatgaggggctacatg
tcgcagttccccagttttccgagctggctcggtcgtcactccacaacgggcaagaacgcg
cggatcttgcaggagcttaccatgcacatgagcctccggacgcatgcgtgccaacgcgcc
gtgaaccttgaatacctgggcgccctgcggaacgagctggcgcggccgctgcagacgtgg
ggctcggagggcgtcgcgcagacactgagcctcatggatgactactgcctgaccaaggag
gacgtggacagcctcatggaagtgtcatcttaccacggcagcaccgaccctctcgccaaa
ctcgaccctaaggtcaaggcggcgtttactcgggcctacaacaaagaatcgcacctcacg
ccgtactcactggccgtgggccccaagaaggggcgacgaggccctggagggggtggaacg
aacgaggagggagaagattttgacggagcagagggcgatggagctgcagctgtgccggat
tcggccagcgagcacgaggatgacatggacatttccgccgacgccatgattaagcaaaag
aagaagccagcgaaaaaagcatccaaggaaacgagctcccccagcaaggccgggacgagc
agcaaggccgggacgagcagcagggctggggcgagcagcagggcccgggcgagaagcagg
gccgtaaagggtaaaaagataaagtag
DBGET
integrated database retrieval system
