Petromyzon marinus (sea lamprey): 116943198
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Entry
116943198 CDS
T09614
Symbol
SRSF5
Name
(RefSeq) serine/arginine-rich splicing factor 5 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
pmrn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116943198 (SRSF5)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116943198 (SRSF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116943198 (SRSF5)
Spliceosome [BR:
pmrn03041
]
Common components
Common spliceosomal components
SR proteins
116943198 (SRSF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
DbpA
RRM_occluded
Nup35_RRM_2
SET_assoc
Motif
Other DBs
NCBI-GeneID:
116943198
NCBI-ProteinID:
XP_032811737
UniProt:
A0AAJ7T5Q8
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All DBs
Position
17:3634139..3640109
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AA seq
290 aa
AA seq
DB search
MSSSSRVFIARLGPHVRTKDVEKFFKGYGKIRDIDIKAGFGFVEFDDCRDADDAVSDLNG
RELNNERMTVEHARAPRARGDRMDTFVRRPSGPPPTYRPRGGGPSSSSASSGGRYGPPSR
TDHRLVVENLSSTVSWQDLKDYMRQAGEVTFADAHRIHQNVGVVEFATRNDMKNAIDKLN
GKEINGRKIKLVEENKRKSSRSRSRSSRSSRSDSRSRSRSRSSSRSRSPRPSRRSPPTRR
SRSPQPAKRSRSPPPKRGSGSRSPPAADQANNKPKSLTVPSRSHSASSGE
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatccagtcgagttttcattgctcgcctggggccacatgtcaggaccaaggat
gtggagaagtttttcaagggctacggaaagattcgagacattgacatcaaagcagggttt
gggtttgtggaatttgatgattgcagagatgctgatgatgcagtcagtgacctgaatggc
agggagctaaacaatgaaagaatgacagtggaacacgctcgcgctccccgggctcgcgga
gatcgcatggacacgttcgtgcgccggccctcgggccctccgcccacctaccgccctcgt
ggaggaggaccatcgtccagctccgccagtagtggtggcagatatggacctccaagcagg
accgatcatcgcctggttgtcgagaacctgtcctccactgtcagttggcaggatttgaag
gactacatgaggcaggctggcgaggtcacctttgctgatgctcacaggattcatcaaaat
gttggagtggtggaatttgctacaagaaatgacatgaagaatgctattgacaagcttaat
ggaaaggagattaatggaagaaaaataaagcttgttgaagaaaacaaacgcaagagctcc
cgtagccgctcccgctcgagcagatcttcccggtctgatagccgctcccggtcgcgctcc
cgcagctcctcgcgctcccgcagtccccgaccatcccggcgctccccaccaacccggcgt
tcccggagcccccaaccggccaagcgctctcgcagtcctccgccgaagcgggggagtggc
agtagatcgccccccgcggccgaccaagcgaataacaagccgaaaagtttgaccgttccg
tcgcgttcccactctgctagtagtggagaatag
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