Petromyzon marinus (sea lamprey): 116943210 Help Entry 116943210         CDS       T09614                                  Symbol MSH6 Name (RefSeq) DNA mismatch repair protein Msh6   KO K08737   DNA mismatch repair protein MSH6 Organism pmrn  Petromyzon marinus (sea lamprey) Pathway pmrn03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pmrn00001]  09120 Genetic Information Processing   09124 Replication and repair    03430 Mismatch repair     116943210 (MSH6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pmrn03400]     116943210 (MSH6) DNA repair and recombination proteins [BR:pmrn03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     Mismatch and loop recognition factors      116943210 (MSH6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II Metal_resist MUM1-like_PWWP Motif Other DBs NCBI-GeneID:  116943210 NCBI-ProteinID:  XP_032811773 UniProt:  A0AAJ7T7W9 LinkDB All DBs Position 17:4429799..4459781 Genome browser AA seq 1417 aa AA seqDB search MSQKNTLFKYFNKSPGLTAKAKSAGSPTEADPPPPGASSPPTEKERGPRAANAKRERGSD VAQAREAAKAPKSSEESEFQPGDLLWAKLEGYPWWPSLVYDHPESGAHTRGRGKSLRIHV QFFDTPPTRSWVGAKYCKPYNGSSSKEAQRGGVFFSTNPQILGAMKQADKAIPLSMEKRL DLVVCVEPSDEEDSDEADEEMEVDAIASDVEANGKGDGEEEEKEEDDGGSDGTACETRTP LRSTRKTALEKNGRKNKRRRIVVPSDTDDSDAEFKPDTVDASSDEASSGVDEKEASEPES ASDPESPVKKRKRTTTKAPALTPSRQPLMLGLSSVASSGKAATPKQAQTGSNAKAKLSAF SSDTLESQNGGGQDGGKEGGGWDHEKLDWLRDGKRRDGKRRLQSDPEYDPSSIYVPDSFL SACTPGMRRWWEIKSTLFDTVLFFKVGKFYELYHMDALTGVSELGLLFMKGTWAHSGFPE TSFARFSDGLVQKGYKVARVEQTETPDMMEARCRAMARPATKLDKVVKREVCRIITKGTQ TYSILDGDPSDAQNKFLLAVREREGPPGGSGNNSGANETGASVRTYGVCFVDTSVGVFHL GQFTDDRHCSRFRTLVAHHAPAQVLYERGGLSAETQKIVRVTLASALQDALTPSTQFWDA TKTLKVLAEEGYFKVEDERGGSGGGGGSSGALPPVLRAMTAASDSLGLAAADEAELALSA LGAMLFYLRKCLIDHELLSMGNFRRYQPPDLALAGDAHNGHRDANEDDDEEEEVGSTGLA TRRMVLDGVTLTNLEVLQSSTTGGVEGTLLVRLDSCLTPFGRRLLRAWLVAPPCDPRAID DRLDALEDLMAVPDKVLQVKDLLRKMPDLERLLSKIHGLGTPLRASRDHPDSRAILYEET AYSKRKIADFLSTLEGFRAASQAAGLLQECAGDFKSRLLRKVVSTEDGGHFPDLSPELQR WDTAFDHQKARSSGVITPRPGFDPEYDQALLDISANKKLLDEYLEKQRKRLSCKSIVYWG TGRNCFQMEVPDAVAQRNTPEEYQLKSTKKGFRRFHSPEIERLMALLSDAEERRDIAMRD CMRRLFYNFDASYKQWSAAMHCMAVLDVLLSLAHYSEQGGEGANPMCRPSVRPPPSEGGS SGGGPFLELRGSRHPCVSTTFLGDSFIPNDVVVGLSDGDDDGGARCVLVTGPNMGGKSTL MRQAGLIVIMAQLGCYVPAEACRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQH ATRHSLVLLDELGRGTATYDGTAIASAVVHELAEGVRCRTLFSTHYHSLVEDFAASPHVR LGHMACMVEQENDDDPSQETITFLYKFVAGACPKSYGFNAARLAGLPDAVVRAGHRKARE FESSTNALRAFRMLCSMSEGNFHLEKLKDIQRMIGEL NT seq 4254 nt NT seq  +upstreamnt  +downstreamnt atgtcacagaagaacacgctcttcaagtacttcaacaaatcgccgggcctgaccgccaag gccaagagcgctggctcgcccaccgaggccgacccgcctcccccgggggcctcgtctccg cctaccgagaaggagcgcggtccgcgggcggcgaacgctaagcgagagcgcggctccgat gtggcccaggcccgagaggcggcgaaggcgccaaagtcgtcggaagagagtgagttccaa ccaggtgacttgctgtgggccaagctggagggatacccgtggtggcccagcctggtgtat gaccaccccgagtccggagcgcacacacggggccgcggaaagtccctgagaatccacgtg cagttttttgatactcctcctacccgcagctgggtcggtgcaaagtactgcaagccctac aatggatccagctcgaaggaggcgcagaggggaggcgtcttcttcagcaccaatcctcag atcctgggggcgatgaagcaggccgacaaggcgattccgctgagcatggaaaagcgccta gacctcgtcgtgtgtgtggagccatcggatgaagaggacagcgatgaagctgatgaagag atggaggtggatgcgattgcgtcggacgtggaagcgaatggaaagggtgacggcgaggag gaagagaaggaggaggacgacgggggaagtgatggcaccgcgtgcgagacgcgcacccct ttgcgctcgacgcgcaaaacggcactcgagaaaaacggtcggaagaacaagcggcgccgc attgtggtgccctccgacaccgatgacagcgacgccgagttcaaaccggacacggtcgat gcgagcagcgatgaggccagcagcggtgtcgatgagaaggaagcaagcgagcccgagtcc gcctccgacccggagtcgcccgtcaagaagcgcaagcgcaccacaaccaaggctcccgcc ctaacgcccagtcgccagccgttgatgctgggtctgagcagcgttgcgtcgtccggaaag gcggcgacccccaagcaagcccagacgggttccaatgccaaggctaagctgtccgccttc tcgtcggacaccctcgagagccagaatggcggggggcaggatggcggaaaagagggtggc gggtgggaccatgagaagctggactggttgcgggacggcaagcgtcgcgacggcaagagg cggctccagtcggaccccgagtacgacccttcctccatctacgtccccgattccttcctg tccgcgtgcacgcctggcatgcggcgctggtgggagatcaagagcacgttgttcgacacc gtgctcttcttcaaggtgggcaagttctacgagctgtaccacatggacgcgctgacgggc gtgtcggagctgggcctgctcttcatgaagggcacatgggcccactcgggcttcccagag acctcctttgcgcgcttctcggatgggctggtgcagaagggctacaaggtggcgcgagtg gagcagacggagacgcccgacatgatggaggctcgctgccgcgccatggctcgcccggcc acaaagttagacaaggtggtgaagcgcgaggtttgccgcatcatcaccaagggcacgcag acgtacagcatcctcgacggcgatccctcagacgcgcagaacaaattcctgctggccgtg cgcgagagggagggcccgcccggcggcagtggcaacaatagcggcgcgaacgagacgggg gcgtccgtgcgcacgtacggcgtgtgtttcgtcgacacgtctgtcggggtcttccacctg ggccagttcacggacgaccgccactgctcgcgcttccgcacgctggtcgcgcatcacgca cccgcgcaggttttgtacgagcgcgggggcttgtcagccgagacgcagaagattgtccgt gtgacgctggcttcggcactgcaggatgctctgacgccctccactcagttctgggatgcc accaagacgctcaaggtgctagcggaggagggctacttcaaggtcgaggacgaacgcgga ggcagcggcggcggtgggggcagtagcggtgccctgccgcccgtgctgcgcgccatgacg gccgccagcgactcgctgggcctggcggcggcggacgaggcggagctggcgctgtccgcc ctgggggccatgctcttctaccttcgcaagtgcctcatcgaccacgagctcctctccatg ggcaacttccgccgctaccagccgcccgaccttgcgctcgccggcgatgcgcacaacggc caccgtgacgccaacgaggatgatgatgaggaggaggaggtgggcagcacgggactcgcg actcgccgcatggtgctggacggcgtgactctcaccaacctggaggttctgcagagcagc acgacgggcggcgtggagggcacgttgctggtgcgcctcgactcgtgcctcacgccgttc gggcgccgcctgctgcgcgcctggctggtggcgccgccgtgcgacccacgagccatcgac gaccgcctcgacgcgctggaggacctcatggccgtccccgacaaggtgttgcaggtgaag gatcttctgcgcaaaatgcccgacctggagcggctgctgagcaagattcacggactgggc accccgctgcgcgcgagccgcgaccacccggacagccgcgccatcctctacgaggaaacg gcgtacagcaagcgcaagatcgccgacttcctctccacgctcgagggtttccgcgctgcc agccaggctgctggcctgctgcaggagtgcgcgggcgacttcaagtcgcggcttctgcgc aaggtggtgtctacggaagatggggggcacttcccagacctgtcccccgagttgcagcgc tgggacacggcgttcgaccaccagaaggcgcgcagctcaggcgtcatcaccccacgtcca ggcttcgaccccgagtatgaccaggcgctcctggacatctccgccaacaagaaattgctc gatgaatacttggagaagcagcgcaagcgtctgagctgcaagtccatcgtctactggggc acgggtcgcaactgcttccagatggaggtgccggacgccgtggcgcagaggaacactccc gaggagtaccagctcaagtcgaccaagaagggcttccgccgattccactcgcccgagatc gagcggctgatggcgcttctctcggacgccgaggagcggcgcgacatagccatgcgcgac tgcatgcgccgcctcttctacaacttcgacgccagctacaagcagtggagcgccgccatg cactgcatggccgtcctggacgtgcttctcagcctggctcactacagcgagcagggcgga gagggcgctaaccccatgtgccgcccgagcgtgcggccgcccccctcggagggcggctcg tcggggggggggcccttcctggagctgcgtggctcccgccacccctgcgtctccaccacc ttcctgggcgacagcttcatccccaacgacgtggtggtgggcctttcggatggagacgat gacggcggcgcccgttgcgtgctcgtcacgggacccaacatgggcggcaagtcgacgctc atgcgccaggcggggctcatcgtcatcatggcacagctgggctgctacgtgccggccgag gcgtgccgcctgacgcccgtggaccgcgtgttcacgcggctgggggcctctgaccgcatc atgtctggggagagcacgttcttcgtggagctgagcgagacgtccagcatcctgcagcac gcgacgcgccactccctcgtgctgctcgacgagcttggccgcggcacggcgacgtacgac gggacggcgatcgcgagcgccgtggtgcacgagctcgccgagggcgtgcgctgccgcacg ctcttctccacacactaccactcgctcgtggaggacttcgcggccagcccacacgtgcgc ctgggccacatggcgtgcatggtggagcaggagaatgacgacgaccccagccaagagacc atcaccttcctctacaagttcgttgccggcgcgtgccccaagagctacggcttcaacgcc gcccgtctggccgggctgcccgacgcggttgtgcgggcaggacaccgcaaggcgcgcgag ttcgagagcagcaccaacgccctccgtgcattcaggatgctgtgttccatgtcggagggg aactttcaccttgagaagctgaaggacattcagaggatgatcggcgagctgtga

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