Petromyzon marinus (sea lamprey): 116943358
Help
Entry
116943358 CDS
T09614
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116943358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116943358
Enzymes [BR:
pmrn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116943358
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116943358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
116943358
NCBI-ProteinID:
XP_032812084
UniProt:
A0AAJ7T766
LinkDB
All DBs
Position
17:12712020..12749384
Genome browser
AA seq
538 aa
AA seq
DB search
MCDINIDNFFQKLPEMREAIFQADFIAIDTELSGLDAGPLSRFSLFDSPRDHYTRRRESA
LVYSIVQLGLSAFKQDNEVEGRFSVRTYNLYLCPAAVLGSGSSITWELPALIFLRRHGLD
IAQVVRKGVPYLNWEQEKSLAREVESNPTALLSLEWGEEVWNAVTSWLSEAKPGDSTVLT
ETGVLPPGPSTRLLHWVLRSTFPSIWTSEKDGQLLLMRVTPSGREQQEASTPGDLCPLGL
MRSMLGVTSVIRYLVEAQKPLVGHSMYLDLLHVFQSFIAPLPEPYGNFKRSLSELFPSVY
DTKHMALASEKMLLRNDVCHMDSLENLYMAFKRMMPWKLYAPSMLHAPGFEKYRDGGKPH
EAGYDAFMTGSVFLMMTYLSVMEGLCGRLQARPQLSDYLWAAQPFVNRVHMMRSYTAYMN
LAGADPAARSSVMLVVSERRGGGGGGGDGVCARVAAAVRSSASCDVRPLGPRRALVCLTG
LRGLRDVKSRLLDTGRFNVRRYRPWMDSRLASTLFWGSGLIMAMSLFLWLVPGPSKIQ
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgacatcaacatcgacaacttcttccagaagcttccggagatgagagaggcgatc
ttccaggcggacttcatcgctatcgacacggagctcagtggactggacgcggggcctctc
tcgcgcttcagtctgttcgactccccgcgagaccactacacccggaggagggagagcgcc
ctggtctactccatcgtgcagcttggattgtcggccttcaaacaggacaatgaggtggaa
ggcaggttcagtgtacgcacgtacaatctgtacctgtgccctgctgcggttctgggctcc
ggttcgagcatcacctgggaactcccggccctcatcttcctgcgcagacacggcttggat
atcgcccaggtggtgaggaagggagtcccgtatctcaactgggagcaggagaagtctctg
gctcgggaagtggagtccaaccccacagcactactctcgctggagtggggcgaggaggtg
tggaatgccgtcacctcgtggctgtcagaagccaaacccggagactccactgtgctcact
gagaccggggtcctgccacccggcccctcaactcgccttctgcactgggttctccgttcc
acgttcccctccatctggacctcggagaaagatggccagctgctgctcatgagggtcact
ccatcgggccgcgagcagcaggaagcctccacgcccggtgacctttgccccctcggcctg
atgcgaagcatgctgggagtcacctctgtgattcgctacctggtggaggcacagaagcct
ctggtcggtcacagcatgtacctggatctccttcacgtcttccagagcttcattgcccca
ttgccagagccctacgggaatttcaagcgttcgctgagcgagctcttcccctccgtgtac
gacaccaaacacatggccctggcgtccgagaagatgctgctgaggaatgatgtgtgtcat
atggactcactggagaacctttacatggcattcaagaggatgatgccctggaagctgtac
gctccttccatgcttcacgctccggggtttgagaaatacagggacggagggaagccgcac
gaggccggctacgacgccttcatgaccggctccgtgttcctcatgatgacctacttatca
gtgatggaaggcctctgcggccgtctccaggcgaggccgcagctgagcgactacctgtgg
gccgcgcagccatttgtaaaccgcgtccacatgatgcgctcctacacagcctacatgaat
ctggctggcgctgatccagcagcgcggtcctcggtgatgttggtggtgagcgagagacgc
ggtgggggcggtggcggcggcgacggagtctgtgcgcgcgtcgctgcggccgttcgttcc
agcgcctcctgcgacgtgcgtccgctgggaccgcgtcgggcgctcgtctgcctcacggga
ctgcgcgggctgcgggatgtgaagtcgaggctgctggacaccgggaggttcaacgtgcga
cgttacagaccctggatggactccagactcgcgtccaccctcttctggggcagtggattg
ataatggccatgtccctcttcttgtggctcgtgcccggtcccagcaagattcagtga
DBGET
integrated database retrieval system
