Petromyzon marinus (sea lamprey): 116943483
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Entry
116943483 CDS
T09614
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-13-like
KO
K16499
protocadherin delta 2
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmrn04515
]
116943483
Cell adhesion molecules [BR:
pmrn04515
]
Cadherins
Protocadherins
116943483
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
116943483
NCBI-ProteinID:
XP_032812204
EnsemblRapid:
ENSPMAG00000045860
LinkDB
All DBs
Position
18:complement(8883608..8899379)
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AA seq
1151 aa
AA seq
DB search
MPSPRATRLPIPLLLLAVAALGASDAAVPPPPLRFSVDEESPPGTALGNLARAMGLSAAE
LRARRPDVISASFRVAADSGDLTTASRFDRESLCPGPYGADDLAPCTLDVPVVLEGPSEV
RHVRVEVLDVNDHAPEFASPSTVLNVSEATPPGTAFPLEAARDLDAGTNSVRGYELSGTD
AFGLEESAAWGAPEGPAFPALRLLRPLDREERAVHEFTLTARDGAAPPRVATQRVVVRVL
DANDNAPVFSQVVYHARLREGAPRGLLVARLNATDADEGDNGRVEYAPRGRSDPRARDLF
SVERATGEVRLRGALDREQAATLELRVQARDLGPDPMTGYAKVLVTVLDENDNAPLIALG
VDAEGTARVPEGEAPGTLVASLVVSDPDDGDNGRYRCWLEGGGPFELLRGDAGYSIVTSA
ALDRETTDAYELLVRAEDRGSPPLDASAPLRVVVTDRNDNAPGFTRGAYEFSLLENNVPG
AFVATVEATDPDLGDNGRVVYSIAPGGSPPALSYVSVDGVSGKIYALRSLDRESLPRLSF
AVEARDLGEPQLNSTARVTIAVRDSNDNAPAVALPRLRNGNATRRVLRQAARGSLVLRLQ
ATDADEGDNGRVSYSVIDKEQEQGGEAVGWFAVDARSGELTSARSFAPGDPGRFEVTVEA
RDHGSPALTARATITVILVDTVDELNPGDDGHDDFDGADDGSSSSSAGGVGGEGESGSST
TGGEAGRMPLSLILIIALGGVCSLLFVAMVVIAVVCKRENKEIRTYNCRTAEAYLYRKPH
KAISKRAIVVVPPSEAAARRGPRPAALGECSAEGAREPGQGAPHVPESPEQLAQVARKSR
TDLPCSGGSNGSRESGGLGVGARRGGGGGGDGGGGGDDDGRPRADHRVRFAFRIRLRARS
FLMCNRAGGHGARCSSSGGGGGSRGRGSPCNISSSGGGHVDYRCNVHAQPGPQARPCSFL
TFGKDERQLAAQQQQLTTKKEDGGAVAVAGACNGDSSNRNSCSSSSSCSDAAELSAFLGE
CVARYCSLESQPEARCSKSHRLLLSSSSSSSSSSSSSSAAADLECGLDSLSLCSRDEDAR
GEEDEEDGRSVGFLRVLSVDSDDGGDGGSGDEDDGGGGGYDDATCSHHHVRRDDARLVLD
VTLEQVDGVTV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccccgcgggcaacccggcttcccattcccctcctcctcctcgccgtggccgcg
ctgggcgcgtcggacgcggccgttccgccgccgccgctgcgcttctccgtggacgaggag
agccctcccgggacggcgctgggcaacctggcccgggcaatggggctgagcgccgcggag
ctgcgggcgaggaggcccgacgtcatctcggcgtccttccgcgtggccgccgacagcggc
gatctgacgacggcgtcgcgtttcgaccgcgagtcgctgtgcccgggcccctacggcgcc
gacgacctcgcgccgtgcacgctggacgtgcccgtggtgctggaggggccctccgaggtg
cgccacgtgcgcgtggaggtgctcgacgtcaacgaccacgcgcccgagttcgcgtccccc
tcgacggtgctcaacgtgtccgaggcgacgccgccggggaccgcgttccccctcgaggcg
gcgcgggatctcgacgcgggcaccaactcggtgcgcggctacgagctcagcggcacggac
gcgttcggcctcgaggagtcggcggcgtggggggcgcccgaaggcccggccttccccgcg
ctgcgcctgctgaggcctctggaccgcgaggagcgcgcggtgcacgagttcacgctcacg
gcgcgtgacggcgccgcgccgccgcgggtcgccacgcagcgcgtcgtcgtgcgcgtcctc
gacgcgaacgacaacgcgcccgtcttctcgcaggtcgtttaccacgcgcgcctccgcgag
ggtgctccccggggcctcctggtcgcgcgcctcaacgccacggacgccgacgagggcgac
aacggccgcgtcgagtacgcgccgcgcggccgctcggacccgcgcgcccgcgacctcttc
tcggtggagcgcgccacgggcgaggtgaggctgcgcggcgcgctggaccgcgagcaggcg
gccacgctggagctgcgcgtccaggccagggacctggggcccgaccccatgacgggctac
gccaaggtgctcgtcacggtgctcgacgagaacgacaacgcgccgctcatcgccctcggc
gtggacgcagagggcacggcgcgcgtccccgaaggcgaggcccccggcaccctcgtggcc
tccctggtcgtcagcgaccccgacgacggagacaacggccgctaccgctgctggctggaa
ggaggaggccccttcgagctgctgcgcggcgacgcgggctactccatcgtcacgtccgcg
gcgctcgaccgcgagacgaccgacgcctacgagctgctcgtgcgcgccgaggatcggggc
tcgccgccgctcgacgcctcggcgccgctgcgcgtcgtggtgacggacaggaacgacaac
gcgcccggattcacgcgcggcgcctacgagttctccctgctcgagaacaacgtcccgggc
gccttcgtggcgacggtggaggccacggacccggacctgggcgacaacggccgcgtggta
tactccatcgcgccaggcggctccccgcccgcgctctcctacgtctccgtcgacggcgtc
agcggcaagatctacgcgctgcgctcgctcgacagggagtccttgccgcgcctgagcttc
gcggtggaggcgcgggacctgggcgagccgcagctcaacagcaccgcgcgggtcaccatc
gcggtgcgcgactccaacgacaacgcgcccgcggtcgcgctcccgcggctgcgcaacggg
aacgcgacgcgccgcgtgctgcgacaagcggcgcgcggctccctcgtgctgcgcctgcag
gccacggacgcggacgagggcgacaacggcagggtgagctactccgtcatcgacaaggag
caggagcaggggggcgaggcggtcggatggttcgcggtggacgcgcggagcggggagctc
acgagcgcgcggagcttcgcgcccggcgacccggggaggttcgaggtgacggtggaggcg
cgcgaccacggcagtcctgcgctgacggcgcgcgcgaccatcaccgtgatcctggtggac
accgtggacgagctgaatcccggcgacgacggccacgacgacttcgacggcgctgacgat
ggcagcagcagcagcagcgctggcggcgtcggcggcgagggcgagagcgggagcagcacc
acgggcggcgaagcgggccgcatgccgctctcgctgatcctcatcatcgcgctcggggga
gtttgctcgctgctcttcgtcgccatggtggtgatcgccgtggtgtgcaagcgcgagaac
aaggagatccgcacctacaactgccgcacggccgaggcctacctctaccgcaagccgcac
aaggccatcagcaagcgcgccatcgtcgtggtgccgccgagcgaggcggccgcgcgccgg
ggcccgcggccggccgcgctcggggagtgcagcgcggagggggcgcgggagccgggccag
ggggcgccccacgtgccagagtctcccgaacagctcgcacaggtcgcccgaaagagccgg
acggatctgccttgcagcggcggcagcaacggcagcagggagtcgggcgggctaggagtt
ggggcgaggcgaggcggcggcggtggtggtgatggcggcggtggtggtgatgatgatggg
agaccacgcgctgaccacagggtcagattcgcgttcaggattagacttagggcgaggagc
tttctcatgtgcaacagagcagggggtcacggtgcccggtgtagcagcagcggcggcggc
ggcggcagcaggggtcgcggatccccatgcaacatcagcagcagcggtggcggccacgtg
gattacagatgcaacgtgcacgcgcagccgggaccccaagcacgtccttgttcattcctc
accttcgggaaagatgaacgccagctcgcagcgcagcagcaacagctgacgacgaagaag
gaagacggcggtgcagttgctgtcgctggagcctgtaacggtgacagcagcaacaggaac
agctgtagcagcagcagcagctgtagtgacgctgccgaactgagcgcctttctcggggag
tgcgtggcgcggtactgcagtctcgagtcccaaccagaggcgcgctgcagcaagagccac
cgcctgctgctgtcttcgtcgtcatcttcttcttcatcatcatcctcatcatcagcagca
gcagatttggagtgcggactcgactcgctgtcgctgtgcagtcgagatgaggacgcgagg
ggagaggaggatgaggaggatggcaggagcgtggggttccttagagtgctgagcgtcgat
agtgatgacggtggtgatggcggtagcggtgatgaggacgatggtggtggtggtggttat
gatgacgccacgtgctcgcaccaccacgtgcggcgcgacgatgccagactcgtgttggac
gtcacgctggagcaggtcgacggagtcaccgtgtga
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