Petromyzon marinus (sea lamprey): 116943572
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Entry
116943572 CDS
T09614
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116943572 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116943572 (PAN3)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116943572 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
116943572 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
Pkinase
zf_CCCH_4
zf-CCCH_2
Zn_finger_prot
Torus
Motif
Other DBs
NCBI-GeneID:
116943572
NCBI-ProteinID:
XP_032812404
UniProt:
A0AAJ7WW64
LinkDB
All DBs
Position
18:3291810..3325009
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AA seq
923 aa
AA seq
DB search
MSGGGGGGGAVAKPPPPTPQQQQQQQQQPQPPQQQQPQQPQQLLPAKPCRYYAKDRTCFY
GDDCQFVHDDPDAGKPAEAAAVVVAAAAATAAAPMEGGHFLQIPLLEGGGVPDGNLPNSF
FSSSFIGVNGFGGGGSGDAKFPVMARMTNSSSSPSLTGDGAKLYSPSGQDSINSPNSSLF
SDFSNLNLSAQRRKTPNPTASEFIPKAGLGASPRMSSGVAQSPIAGPFSPAITLTHAMTS
PSSLAPERRLRDLSTSHCSADPAKAGSSPLHSPKVTPHTSPAARRRSHTPNHVGFSIGGG
GGGGPHHHHGHANPHALTHAHQHHVHQHAALPQGHAAHAAHAGHAGHAGHAAHAAHAAHA
GHAGHAGHAGHAGHAGHASHAGHAAAHAAAHAAHVQGHGGHAPHGHAGAAAPVPSTQSSA
VADPLAQAALVQKETVGGTTYFFTDPGLGQHPGMVFPSYHVYPSPSAQVAYMQPKANAPS
FFMMDELRQDLINRHLLTMAQIDQAENPDIPAEVDNYHSLFPLEPPQTNPMQKSGTFGYT
TTCYKAVSSKDGMAYCLRRIHGYRLTNTKCMILIDMWKKQQHSNIVALREVFTTKAFGEH
SLVFAHDFHAGAETLMSKHFSDPNADAFFNKRKWGQVNGPLPRQHAGLLPESLIWAYVVQ
LSSALRTVHSAGLACRVMHPSKILVGGKTRLRVNCVGIFDVLTFDGTQASPLALIPQYQQ
EDLTTLGKIVLSLSCNSMVGVQRDNISKAMELVTHNYSTDLKNLIIYLLSNQTRLRSVND
IMPMIGARFYTQLDAAQMRSDIIEEELAKEVQNGRLFRLLCKLGTINERPEFQKDTTWSE
TGDRYLLKLFRDHLFHQVSEIGAPWVDIAHIVQCVNKLDAGTPEKLSLVSRDEKSVLVVT
YADLKRCFDNAFSELLAASNGQL
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggagggggaggaggtggcgccgtcgcgaaaccaccgccgccgacgccgcag
cagcagcagcaacaacaacagcagccgcagccgccccagcagcagcagccccagcagccc
cagcagctgctgccggccaagccttgccgctactacgccaaggacaggacgtgcttctac
ggcgacgactgccaattcgtgcatgacgatccggacgcaggcaagcccgccgaggcagca
gccgttgtcgtcgccgccgcagccgccacagccgccgcgcccatggaaggcggacacttc
ttgcagatcccattgctggaaggtggaggagtaccagatgggaatcttcccaattccttc
ttcagcagcagttttattggcgtgaatggttttggcggaggaggcagcggagacgccaaa
ttccccgtcatggcgagaatgacaaacagcagtagttctcccagcctcactggagacggt
gccaaactctactcgccttcagggcaagattccataaactctccaaattcatcccttttt
agtgatttctcaaatctcaacctatctgcgcagcggagaaagacgccaaacccaacagcc
tctgagtttatccctaaggctggattgggcgcaagtccaagaatgagcagcggagtggcc
cagtcgcccattgcaggaccattctctcctgcaatcaccctgacccatgccatgacaagc
ccttcatcccttgctccagagcggagactaagggacttgagcacatctcactgttcagcc
gatccggcaaaagctggatcctccccgctgcattcgcccaaggtcaccccgcacacctct
ccggcggcacggcgccgcagccacacgcccaatcacgtcggcttctccatcggtggcgga
ggaggaggcggtccccatcaccaccatggccacgccaacccgcacgcgttgacccacgcg
caccagcaccacgtgcaccagcacgctgccctcccgcagggtcacgcggcccacgcggcc
cacgctggccacgctggccacgctggccacgcggcccacgcggcccacgcggcccacgct
ggccacgctggccacgctggccacgctggccacgctggccacgcgggtcacgctagccac
gcgggccacgcggctgctcacgcggctgctcacgcggctcatgtccagggccacggcggc
cacgctccgcacggtcacgctggcgcggccgcccctgtcccgtccacccagagctcggcc
gtggccgaccccctggctcaggcagcactcgtgcagaaggagactgttgggggcaccacc
tacttcttcaccgacccgggactcggtcaacaccctggcatggttttcccttcctatcat
gtgtatccttctccctcggcacaagtggcatacatgcagcccaaggcgaatgccccttct
ttcttcatgatggacgagctgcggcaggatctaatcaacagacatctcttaaccatggct
cagatagaccaagctgaaaacccggacatcccagcagaggtggacaactaccacagtctg
tttccactggagccaccacagacgaacccaatgcagaagtctggcacctttggctacacc
accacctgctacaaggcagtcagcagcaaagatggcatggcttactgcctgcgtcgcatt
catggctaccgtctgacgaacaccaagtgcatgattctcatcgacatgtggaaaaagcaa
cagcactcgaacatcgtggccttgcgagaggttttcaccaccaaggcattcggcgagcat
tcccttgtgtttgcgcacgactttcacgcgggagctgaaactctcatgagcaagcacttc
agtgaccccaacgcagacgccttcttcaacaagagaaagtggggtcaggtgaatggaccc
ctccctcggcagcatgccggcttactgcccgagtctctcatctgggcatacgtggtgcag
ctgagctcggccctgcgcaccgtgcattcggctggcctggcctgccgcgtcatgcacccc
agcaagatcctagttggagggaaaacacggttacgtgtgaactgcgtggggattttcgac
gtgctcactttcgacggcacccaagcttccccgctggcactaatcccacagtaccagcaa
gaggatctgacgacacttggcaagattgtgctgtctctctcgtgcaactccatggttggg
gtgcagcgggataacatttccaaggcgatggagctcgtcacccacaactactccacagac
ctcaagaacctcatcatttacctgctgtccaatcagacgcgcctccgtagcgtgaatgac
atcatgccaatgatcggagcgcggttttacacgcaattggacgcggcgcagatgaggagc
gacatcattgaggaagagcttgccaaggaagtgcagaacggacgactcttcaggctgctg
tgtaagctcgggaccatcaacgagcggcctgagttccagaaggacaccacctggtcagag
acgggcgatcgctacctcctgaagctcttccgtgaccacttattccaccaggtgtccgag
attggggctccctgggtggacatcgctcacatagtgcagtgtgtcaacaagctcgacgca
gggactccagagaagctgagcttggtctcccgtgacgagaagagtgttttggtcgtcacc
tacgccgacttgaagcgctgctttgataacgccttctcggaactgctggctgcctctaat
ggtcagttatag
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