Petromyzon marinus (sea lamprey): 116943604
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Entry
116943604 CDS
T09614
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116943604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116943604
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116943604
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116943604
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
116943604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Death
Motif
Other DBs
NCBI-GeneID:
116943604
NCBI-ProteinID:
XP_032812490
UniProt:
A0AAJ7T8S5
LinkDB
All DBs
Position
18:complement(5136153..5166855)
Genome browser
AA seq
1981 aa
AA seq
DB search
MFGQNKPFGSTFGSTFGGNASTFGQTSNAGGFGSFGAAGFGAAPAGGGMFGGTNQTKPAG
LFGAGAFGQAPANATSTSGFGAATSAAGNPFSSSLFSTPQTNNAANTGGFVQNKPAGFGG
FGANAGSGGLFGTTTATVTQFGANTATGGAFGGFSAQATKGTTIKFIPVEGTDTMMKNGA
STTIRTKHQCITAMKEYETKSLEELRLEDYTDNRKGLQPGALGAAATGSLFGAAATPVNQ
TGGLFGTAATAPAAATGFAFGQPKPNAFGTGAAFSGSASTGGGLFGNTQAQPGAAAAGAG
GATAGVATGVFSKPFGVATATTQASGFSFSGAATATPFGQANATTGGLFGAVGASRPGGL
FGAGTATTATAGAGFGTGGAFGVAAPTSTGLFGATQQSSGFGATGATLFGNKPAGFAAPA
TSTASGFGTGVGGGLFGAKPGGLSLGATNNATGFGFGSANTGGLFGNKITTGGLGAGLGS
TFGSGLGTGQPSLFGNSQPTMGTGLGVSSLSTAPFGGVGSSTGFGTTQGTLGATQAGTAQ
AVIHQNQITALAYNPFGDSPLFRNIVTDPQKKEERLKPTNPEAQKAFSTPTHYRLTPRPA
ARLRPKALGSSGSAKAQLFDGLDDEDAALCNATFMPRKSVKKLAIKSTQSPVFSPLSHSK
DHDDLAPPSDYPVNGLSNGTSLALHANADDTDVSRELPSDMSLGTPGGVEVGTSTRGPPP
KMHKSLLNGSLDGSLLALNVRQARVGAPVAVAEVPKGGRGGGMDRERGSEESSSSVVENL
TQDDEDYEPDEEQQRMMQPHPAGIVLTRFGYYTIPPMDELARLTDENGDCIVNNFTIGRQ
GYGSICFSGEINLKLLNLDAIVHIRRKEVIVYPDDNNKPPCDEGLNRRAEVTLDGVWPLD
KTTGRHITSPERLMRMAYEERLERASTRQGALFREYRPETGSWVFDVKHFSKYGIQDDEE
DEDEVVDPLTGKVLPALPPGHVVEGKKLKTGLAPPAMQQSQKLVSQGKLGPTELGGKELG
GLGGEQDSEMADISLEPVPRGFYAEDDDDTCELQGHVGGYVKELENGAEPVAASHHLASY
LGMSTHRLQVMKASFLAEEEEAEVEVSPQRFGAVSHFPSFSVMQNAPCAAKLADMRALRS
RLSGALLQSKFGLGSTIGMDATVVSPHKDLGQDHLATKPRMSTTIREPSHHMSLSRPYSL
LSPPVGLPVDGKAGGPGRAAAAPQRVCGLIPAQNSVAHGRHYLADAALYAGRSFRVGWGP
CGSLCHVGDLIGCTNSEEQSTDRHEEVGLKAFTPTLVKRIAPSPFKVHVECVSVCSWAGS
EGRCRIQEKLEIALEESERVNEHAQSDAMELGAAAGPDDRELCCPLFRPRPGVSSVHRYA
HWVEDVLAQEAAASTSEAETLKQWYLVWTLCEALWGQLHGRDRVGDDNDDVDVRDEEEAA
MEGVGEGGGRAYAQQAERREALSRWLERAALEKVEGEVALGGNGKLSTYAVFSCLSGRQI
ARACRLAQDAGDHRLALLISQAVGSKPTRQLLALNLSEWGKLQVDHYINSDRIAVYTLLS
GKPVWEMSAGEPVNVCESLDWKRSLAVHLWYMLSPVMSVADALKAYENAFKGSDECERYA
CRPLPPYMEDNKLCPVEEEEMDEEERKQRRPVRDACYHLLKLYSDKHYDLDQLCDASSVT
ADPLDYRLSWHLWLAVQALGYQHLPARSAGALHAAYAAQLESAGLWEWAVFVLMNIPDAS
SRTKAVREMLGRHCSEVEMTEEAFEFVTGRLGVPASWLHEAQAHRARQLGDHRDEAHHLL
HAGLYNACHRVVIRNLAADAIINENYGYLKTFLEEMAAPEISIHIPDWEVAGRVFLDYIR
VTETLLRLHNESETPGAELEALYTEVALLCPRIEDVPCFSARDRLSQAEMAKQTANILRA
VMSLQQGGGEEGKDDVRPGGRLAGLSLHPYAQHIGQLPLPGDYALQELRTLVSAYRLALT
T
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggcaaaacaagccctttggaagcaccttcggttccacttttggtggaaacgcc
tccacgtttggacagacttctaatgcagggggctttggaagttttggagcagcggggttt
ggcgcagcccctgccggaggagggatgtttgggggcaccaatcaaacaaagccagccggg
ctgttcggtgcaggtgctttcggacaggcacctgcaaatgccaccagcacatctgggttt
ggcgctgctacctccgctgctggaaatccgttcagctccagcctcttctcaacaccgcag
accaacaatgcagcaaacaccggaggatttgttcagaacaagccagctggctttggaggg
tttggagccaacgcaggaagcggtgggctttttggcactaccactgcgacagtaacccaa
tttggagccaacacagccactggaggagcttttggagggttcagtgcccaagccacaaaa
ggaacaacaataaagttcattccggtcgagggcactgacacgatgatgaagaatggagct
agcaccaccatccgcaccaagcaccagtgcatcactgctatgaaggaatacgagaccaag
tcgcttgaggagctacgcctggaggactatacggataatcgcaagggattgcagcctggg
gctttgggggcagcagccacaggaagtttgtttggagcggctgccacccctgtcaatcag
acgggtggtctctttggaacagcagctactgctccagcagcagccactggctttgcgttt
ggccagcccaagcccaacgcgtttggcacaggggcagcgttcagcggatcagcatcaacg
ggaggcggcctgtttggcaacactcaggcccagcctggggctgcggctgctggcgcagga
ggagccacggcaggggtcgccacgggcgtgttcagcaagccatttggagtggccaccgcc
accacgcaggcctccggattctcttttagtggggctgccaccgccacaccttttggccag
gccaacgccacgacaggaggtttgtttggcgctgtgggagcgtcacgcccgggagggctc
tttggggccggcacagcgaccacagccacggctggcgcaggatttggcacaggaggggct
tttggtgtggcggcccccacttctactggactctttggtgccactcaacagagttctggt
tttggtgcgactggagcgacgttatttggcaacaagccagcaggatttgctgctccagct
accagcactgcctcaggatttggtaccggagttgggggaggactatttggagccaaaccg
ggtggcctctcccttggtgccaccaacaatgctacgggctttggttttggcagtgcaaac
actggcggtctgtttggaaacaaaattactacagggggtctaggagctgggcttggctcc
acctttggttctgggcttggaacaggacagccatctctctttggaaacagccagcctacc
atgggaacaggtctgggtgtcagctccttgtccaccgctccttttggtggcgttggttcc
tccacgggtttcggaacaacgcagggtaccttgggggccacacaggctgggacggcacag
gctgtcattcaccagaaccaaatcacagccttggcgtacaacccgttcggggactctcca
ctctttcgcaatatcgtcacagacccacagaagaaagaagagcggctgaaaccgaccaac
ccggaggcccagaaggcattctccactcccacacattaccggttgacgcctcgaccggcg
gcgcgtctgcgacccaaggcgctcggctcttcgggatcggcaaaagcacagctgttcgac
ggactggacgatgaggacgccgcgctgtgcaacgccacgttcatgccgcggaaaagtgtc
aagaagcttgctataaagagcacacagtctccagttttctctccgctatctcactcgaag
gatcatgatgacctggcacctccctccgattaccctgtcaacggcttgagtaacggcacc
tccttggcgctacatgcaaatgctgacgacacagatgtgagccgagagctgccgtcggac
atgtccttgggcacgccgggtggcgtggaggtgggcacgtccaccaggggcccgccgccc
aagatgcacaagagcctgctcaacggctccctcgatggatctctgctggcgctgaacgtc
cgacaggcgcgggtcggagcgccagtggcggtagcagaggtgccgaagggggggcgagga
ggagggatggatcgggaacggggcagcgaagagtcgtcgtcttctgtggtggagaatttg
acccaggatgacgaggattacgaaccggacgaggagcaacaaaggatgatgcagccgcat
cctgcaggcattgtgctcacacgctttgggtattataccattcctcccatggacgagctg
gcaaggcttacagacgaaaacggagactgcattgtaaataatttcaccattggccggcaa
ggttatggttccatctgcttttctggggaaataaacctgaagctgctgaaccttgacgcg
atcgtgcacatccgccggaaggaggtgatcgtgtaccctgatgacaacaacaagcctccc
tgtgatgaaggcctcaacaggagagcggaagtgaccctggacggtgtgtggccattggac
aagaccacgggccggcatatcacgagccctgagcgactgatgcgcatggcctatgaggag
cgcctagagagggcctccacgcggcagggagcgctgttccgcgagtaccggcccgagacc
ggttcttgggtctttgatgtaaagcatttctccaagtatggcatccaagacgacgaagaa
gacgaggacgaagtggtggaccctttaacgggcaaagtcctgccggctctgccgcctggc
catgtggtggaggggaagaagttgaagacggggctcgctcctccggcaatgcagcagtcc
cagaagctcgtctcgcagggaaagcttggccccacggagctgggaggcaaggagcttggc
gggctcggtggagagcaggacagcgagatggccgacatctctctggagccggtgccacgt
ggcttctacgcagaagacgacgacgacacgtgcgagctacagggacacgtgggcggctat
gtcaaggagctggagaacggagcggagcccgtagctgcctcccaccacctcgcctcttac
ctggggatgagcacgcaccgcctgcaggtgatgaaggcatcgtttctggcagaggaggag
gaggcagaggtggaggtatcgccacagcggtttggtgccgtctctcattttccatccttc
tcagtgatgcaaaatgctccctgcgctgccaagcttgctgacatgagggcactccgcagc
cggctctcgggagcactgctgcaaagtaagttcggacttggctccactattgggatggat
gccactgtagtttcaccgcataaggatcttggacaagaccacctcgccaccaagcctcgg
atgtccaccacaattcgtgaaccgtcacaccacatgagcttatccaggccctactctcta
ctctcccctcctgtgggtctacctgttgatggcaaggcaggagggcctggacgagcagcg
gccgcccctcagcgggtctgtggcctcataccggcccagaactcggtggcccatggtcgc
cactacctggccgatgcggccctttatgcaggccgctcatttcgtgttggctggggcccc
tgcgggagtctttgccacgttggcgaccttatcggatgcacaaatagtgaggagcaatcg
accgatagacacgaggaggtggggctgaaggccttcacaccaacactggtcaagcgaatt
gcgccatcgccgttcaaggtgcacgtggagtgcgtgagcgtctgctcatgggccggctcc
gagggccgctgccgcatccaggagaagctggagattgccctagaggagagcgagcgtgtg
aacgagcacgcacaatccgacgcgatggaactcggggcggccgctggcccagacgacagg
gagctctgctgccccctgttccgcccacggccaggcgtttcctcggtgcaccgctacgct
cactgggttgaggatgtgctcgctcaggaggcggcagccagcacctccgaagctgaaact
ttgaagcagtggtatctggtgtggacgctgtgcgaggccctctggggccaactgcatggc
cgcgacagagtgggagacgataacgatgacgtagacgtcagggatgaggaggaggctgcc
atggagggtgtcggggaaggtggcgggagggcgtatgcccagcaggcagagcgacgggag
gccctgtcgcgctggctggagcgtgccgccctggagaaagttgaaggcgaggtggcgctc
ggcggtaacggcaaattgtcaacctatgccgtattcagctgcctgagcggaaggcagatc
gcgcgtgcttgtcggctggcacaggatgcaggagaccatcgactcgcactactcatcagc
caagccgtcgggagcaaaccaactcgtcagctgctggccttgaacctctctgagtggggc
aagttgcaggtcgaccattacatcaatagcgatcgcatagcagtctacaccctactctct
ggcaagccggtgtgggagatgtccgcgggggagccggtgaacgtgtgcgagtcacttgac
tggaagcgttcgctcgccgtccacctctggtacatgctgagccccgtgatgtcggtggct
gatgccctgaaggcctacgaaaatgcattcaagggctcggacgagtgcgagcgatacgcc
tgccggccgctccctccatacatggaggacaacaagttgtgccctgtggaagaggaggag
atggatgaagaagagaggaagcagaggcggccagtgagggatgcctgctaccacctgctc
aaactctacagtgacaaacactacgatttggaccaactgtgcgatgccagctccgtcacc
gctgaccccttggattaccggctgtcctggcacctgtggcttgccgttcaagcgctcggc
taccagcatctgcccgctcgtagcgctggagcactgcacgccgcttacgctgcccagctt
gagtcagccggcctctgggagtgggcggtctttgtgctaatgaacatccccgatgcaagc
tcccgaacgaaggcagtgcgggagatgctgggcaggcattgcagtgaggtggagatgacc
gaggaggcatttgagtttgtgacggggcggctgggcgtgccggcttcctggctccatgag
gcgcaggcccaccgagcccgccaacttggagaccaccgcgacgaggctcaccacctgctg
catgctggcctctacaacgcttgccacagggtcgtaatccgcaaccttgccgctgatgct
atcatcaatgaaaactatgggtacctcaagactttcttggaggagatggcagcaccagag
attagcattcacatccccgactgggaggtcgcagggcgcgtcttccttgactacatccgg
gtcacggagactctgctcaggctgcacaacgagtcggaaacgccgggtgctgagctggag
gccctttatacagaagtggctttgctgtgtccacgcatcgaagatgtcccttgtttttct
gcacgagaccgtctcagccaagcagagatggcaaagcaaacggcaaacattctgcgcgcg
gtgatgagtttgcagcagggcgggggggaggagggcaaggatgacgtgcgtcctggaggc
cgcctggccggcctttcactgcacccgtacgcacagcacatagggcaactgccgctaccc
ggcgactacgcgctgcaggagctgaggacactcgtgtctgcgtaccgcctggccctcacc
acatga
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