Petromyzon marinus (sea lamprey): 116943836
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Entry
116943836 CDS
T09614
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116943836 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116943836 (VPS8)
Membrane trafficking [BR:
pmrn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116943836 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_Vps41
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_5
zf-RING_2
zf-RING_11
zf-RING_UBOX
zf_RING_Vps8_fungal
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
116943836
NCBI-ProteinID:
XP_032812968
UniProt:
A0AAJ7T7X5
LinkDB
All DBs
Position
19:2994112..3024180
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AA seq
1406 aa
AA seq
DB search
MSSAESSPSRCASLADLTDDIEELDDKEFDLPQVDTPPTLESILNEDDEEENPFQLDDPA
LFLADGSDACSVETSSLASTDSGDRPYSRKKKKAEQKKPFHGSVLKHVILKGVSSQIVSA
ADRVEAGLPTAMAVSNVIAVGTAHGLVLVYGRDPNQALKLCLGSTAIGAQYGAVSALGIN
RDCTRLLCGFAKGQITMWDLINGKLLRTITDAHPPGTAVLHIKFTDDPTLAICNDSGGSV
FELAFKRVMGVRTCESRCLFSGAKGEVCCIQPLWFPTNLKEHPMSQHFLLAMASLTKILI
VGLKPSLKVMLSVSYGKTNPASVPLMAWHFTLVNGSADPVLAFCRGSVVHFILASCRDSD
NIHFSKQRELHLNYEPINLTWMNSRVLALLDDTETLHVVERANQEQLEALDIASLQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSICSFGGQVLYLGIKSVHVMSLRTWRERVDLLV
RQERFPDALNLAWSFHQGSAKAVLGLPVNIAKRKLLVADKMTDMLMQYVMISMKKCPEPG
KTQALEKHFQEVVPLCIEYCLLLGRTDLLFTQMYEQLGESSVARGVFLESLEPHVLGDRL
TSITPQAMRDLILHYQGQARMATVEACILHMDITSLDLQQVISLCWSHGLYDAVIYIYNT
GMNDYVTPIKEILKVVQNALRTGRQLPGDKVTAGNKLLVYLSCCLVGRAYPMGDIPKNLA
PTVKKQVFEFVIKLHSDEAEVQEEVYPCVRTLLHFDTREFLNVLTLTFEDFRNDKQVVEY
QQRIVDVLLQVMVEGKGFSPSQVGSLFTFLARQLAKPENTLFVNRHLFDQVLEFLCGADD
DSRHAERQQALLELLQAGGTVHFDESKLLALAEKAKFYLVCEFMFEKKQMYDQIVMCYLK
DEARREEVFNFVHNILSIPGYSEQEKALVHQKVMANIQELVSISPQKTADLVISDLSESL
TGILALLEGHPRLLFGFLQCILETGETSPLSRDALSASSDVNERYIDLLCQFSPEKVLPF
LRTSEQYRIDQAIKLVEEHGVSSALAYLLEKSNDVQRAFSIMLQILKEKLDLLMQSLGTA
SNQKAVDQRLLEGVQTALEDVTQLCQRNSGHLSAEEREGLWFPLLEVMMSPQREIKKMTS
SVIAEELKNLTKQLLNSMMGFLTLPAILQRIIQDPIYGSGRFGEIKELVLGMLDTFSYEQ
TLLETTTGLLNQDLHWSLSQLRKAVCRGLHPRHDACGVCTQHYGRRQSPGQRVIIFGCGH
VYHEDCLRGTGCHNAGEGQSNWSCYLCNASNRDGGVIANQAHARTTSLAQIRVASAKDEK
KATTKASKKVPEVVMDPEQFRCFDELQKMNKGRSRIAILAELSKSHSDSEGASHRPLSMV
SSPVGHESVFQNEHFQLRLDAPPPKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgcagagtccagccccagccgctgtgcgtctttggctgatctgacggacgac
attgaggagctggatgacaaagagtttgaccttcctcaagtggacacaccacccacattg
gaaagcattctcaacgaggatgacgaggaggagaatcctttccagctggatgacccagcg
ctcttcctggccgacggttcggacgcttgctccgtggagacgtcctcactggccagcaca
gacagtggcgaccggccctactccaggaaaaaaaagaaggcagagcagaagaaacctttc
catggctcggtgctgaaacatgtcatcctcaagggcgtgtcttcccagattgtatctgcg
gcagaccgagtcgaagctggactgccaactgctatggctgtctccaatgtgatcgcagtg
ggcacagctcatgggttagtgctagtgtacggaagagaccctaaccaggcactgaagctg
tgtctgggcagcacagctataggagcacagtatggtgccgtctctgccctcggtatcaac
cgcgactgcacccgccttctttgtggctttgccaaggggcagatcaccatgtgggatctg
atcaatggaaagcttctgcgaacaataacggatgcacatcctcctggcacagctgttctg
cacattaagttcacagatgatcccactttagcaatctgcaatgacagtgggggctctgtc
tttgaacttgctttcaagagggtgatgggcgtgcggacgtgcgagtcgcgctgtttgttc
agtggcgcgaagggggaggtgtgctgcatccagccgctgtggtttcccaccaacctcaaa
gaacaccccatgtcacagcacttccttctcgccatggcctctctcacgaagatattaata
gttggactgaagccatccctcaaagtgatgctgtctgtgtcctatggaaagacgaacccg
gcgagcgtgccgctcatggcatggcacttcactttggtgaatggctcagcagaccctgtg
ctcgcgttctgcaggggctccgtcgtccacttcatcctagccagctgccgagactctgac
aacatccacttcagcaagcagagggagctgcacctgaattatgagcccatcaacctcaca
tggatgaactcacgcgtgctggccctactggatgacacggagactctgcacgtggtggaa
agagcgaaccaggagcagctggaggctctggacatagccagcctccagctggtctacaac
tccagccacttcaagtcattggccacaggcggcaacgttagccaggccctggcacttgtg
ggagagaaggcatgctaccaatccatctgcagctttggagggcaagtgctttacctggga
ataaaatcagttcatgtgatgtcgttgcgaacttggcgagagagggtggacctgcttgtg
cggcaggagaggtttccagacgccttgaatctggcctggtctttccaccaaggctctgca
aaagccgttctgggtttgccagtgaacattgccaagagaaaattattggttgcagataag
atgacagatatgctcatgcagtatgtgatgatctccatgaaaaaatgccctgagccaggc
aagacacaagctctggaaaaacatttccaggaggtggttcctctgtgcatcgagtactgc
cttctgctgggcaggacggacttgctcttcacccagatgtatgagcagcttggggaaagc
tcagtggcgcggggcgtgttcctcgagagcctggagccccacgtcctgggtgaccgtctc
accagcatcaccccgcaggccatgcgtgacctcatcttgcattaccagggccaggcacgc
atggccacggtggaggcgtgcatcctccacatggacatcaccagcctcgacctccagcag
gtgattagcctttgctggtctcatggcctgtacgatgctgtcatctacatctacaacacg
ggaatgaatgattacgtcacgcccatcaaggagatcttaaaggtcgtacagaatgcactc
cgcactggtcgtcagctgcctggtgacaaggtgactgcaggcaataagctcctggtctac
ttaagctgctgcctggttggcagagcttacccaatgggtgacattcccaagaacctggca
cccaccgtcaaaaagcaggtgtttgagtttgtgatcaagctgcactcggatgaggcggag
gtgcaggaggaggtctatccgtgcgtccgcacgctgctgcactttgacacacgggagttc
ctcaatgtgctcaccctgacgtttgaagacttcagaaatgacaagcaggtggtggagtac
cagcagcgcattgtggatgtcttgttgcaggtgatggtggaagggaaaggcttttcccca
tcacaggtagggtccctcttcaccttcctggcacggcagctggcaaagccagagaacacg
ctgttcgtcaaccgccacctcttcgaccaggtgctggagttcctgtgcggcgcggacgat
gactcacggcatgctgagcgccaacaggccctgctggagctgctgcaggcagggggcacg
gtccacttcgatgagagcaagctgctggcattggcagagaaagccaaattctacctcgtg
tgcgagttcatgtttgagaagaaacagatgtacgaccaaatcgtgatgtgctacctgaag
gatgaggcccggagggaggaagtttttaactttgtccacaacatcctgtccattccgggc
tacagtgagcaagagaaagctctcgtacatcagaaggttatggcgaatatccaggagctg
gtgtccattagcccacaaaagacagccgacctggtgatctcggatctctccgagagtctc
actggcatcttggctcttctagaaggccatcctcgcttgctgtttggatttttacagtgc
attctagaaacaggggagacctctccgcttagccgagatgccctatctgccagctcggac
gtgaatgagcgctacatagacctgctgtgccaattcagtcctgagaaggtcctccctttt
ctgagaacttcggagcagtaccgcatcgaccaagccatcaagcttgtggaggaacatggg
gtgagtagtgccttggcttacctcctggagaagagcaatgatgtccaaagagcattctcc
atcatgctgcagattttgaaggaaaagcttgatcttcttatgcaaagcttgggtacagca
agcaatcagaaagcagtggaccagcgcctccttgaaggggtacagacagcactggaggat
gtcacccaactgtgtcagcgcaactcagggcacctgagcgccgaggaaagggaggggctt
tggtttccccttctggaggtgatgatgtcaccgcagagggaaattaaaaagatgacgtcg
tctgtcattgccgaagaactgaagaacctcaccaagcagttgctgaacagcatgatgggg
ttcctgaccttgcccgcgatcctgcagaggatcatccaggacccgatttacggctctggc
cgatttggagagatcaaggagctggtgcttgggatgttggacacattcagctacgagcag
acgcttctggagacgactacagggttgctcaaccaggacctgcactggtcgctgtcacag
ctccgcaaggccgtgtgccgtggcctgcacccacggcacgatgcctgcggggtgtgcacc
cagcactatggccgccggcagagccctggtcagcgcgtcatcatctttggttgtggacac
gtctaccacgaggactgcttgcgaggcactggttgccacaatgccggtgagggccagagc
aactggagttgctacctgtgcaatgcaagcaaccgggatggaggagtgatcgcaaaccag
gcgcacgcacgtaccacctctctcgcgcagataagagttgcatctgcaaaagatgagaaa
aaagccacaacaaaggcaagcaaaaaggtgcctgaagtggtcatggatcctgagcagttc
aggtgttttgatgagctacagaagatgaacaaggggcgttctcggatcgccatcttggcc
gagttgtccaagagccactctgactcggaaggtgcatcgcaccgtcccctctccatggtg
tcgtctccggttggccatgagagtgtctttcagaacgaacatttccagctgcggctggat
gcacccccaccaaaggactga
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integrated database retrieval system
