Petromyzon marinus (sea lamprey): 116943897
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Entry
116943897 CDS
T09614
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04510
Focal adhesion
pmrn04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116943897
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116943897
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmrn00536
]
116943897
Glycosaminoglycan binding proteins [BR:
pmrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116943897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
116943897
NCBI-ProteinID:
XP_032813113
UniProt:
A0AAJ7WY90
LinkDB
All DBs
Position
19:8555074..8625256
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AA seq
1489 aa
AA seq
DB search
MSNMLAARNLLLLLIAAQALLVTVVKCQDDLSEDGSCVQDGQRYSDKDVWKPQPCSICVC
DSGSILCDDIVCEPLYDCPKTEIPFGECCPVCASSQPSSGPSRVRGQKGEPGEVPETQGL
RGPSGPQGPPGEQGLRGNRGDKGEKGTLGPRGRDGEPGTPGNPGAAGPPGPPGPPGLGGN
FAAQMAGGFDEKSGGAQLGALQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEPGETGTAGP
LGPRGPPGPAGKPGDDGDAGKPGKSGERGPAGPQGARGFPGTPGLPGVKGHRGYPGLNGA
RGEDGAAGAKGENGAAGENGAPGPMGPRGLPGERGRTGPAGPAGARGSDGQAGAAGPPGP
TGPAGSPGFPGAPGTKGEAGPTGARGPEGAQGARGEGGAPGSSGPSGAPGNPGTDGLPGA
KGSSGAPGIAGAPGFPGPRGAPGPQGATGPSGPKGQQGEPGAHGFKGEAGPKGEIGPAGL
QGPPGQAGEEGKRGARGEPGAAGPNGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGP
AGPKGANGDPGRPGEAGLPGARGLTGSPGSPGAEGKLGPQGAPGEDGRPGPPGPQGARGQ
PGVMGFPGPKGAGGEPGKPGEKGIPGAPGLRGLPGKDGETGAQGPPGPAGPAGERGEGGP
PGPPGFQGLPGPSGPPGEAGKPGAQGVPGEAGKVGVSGARGERGFPGERGAPGPQGLQGA
RGLPGTPGTDGPKGATGPGGPPGAQGPPGLQGMPGERGATGISGAKGDRGDSGEKGPEGA
PGKDGGRGVTGPIGPPGPAGAHGDKGDAGPAGPTGPSGARGAPGERGETGPPGPAGFAGP
PGSDGQPGAKGEQGETGQKGDAGAPGPQGPSGAPGPQGPNGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGSPGPAGPNGKDGPKGIRGDSGPVGRAGEPGLQGPIGAPGEKGD
AGEDGPPGPDGPPGAQGLSGQRGIVGLPGQRGERGFPGLPGPAGEPGKQGSTGASGERGP
PGPVGPPGLSGPPGEQGREGNAGSDGAPGRDGAAGAKGERGEAGAAGQPGAPGSPGAPGP
VGPTGKNGARGDQGPQGPMGPPGPSGARGLPGPQGPRGDKGETGEAGERGIKGHRGFTGL
QGLPGPPGSSGDQGLAGSVGPSGPRGLSGPTGPPGKDGNNGQSGPIGPPGPRGRTGETGP
AGPSGPAGLPGPPGPPGPGIDLSAIAGIGQTDKAPDPLRYYRSDQALPELRQHDAEVDAS
IKSLSGQIEGLRSPEGTRKNPARTCRDLKLCHPEWESGNYWIDPNQGCTLDALKVFCNME
TGETCVYANPQTISRKNWWQSKSADRKHVWFGEAMSGGLHFNYGDDNLPANTAAIQMTFL
RLLSMEASQNITYHCKNSIAYMDEETGNLKKALLLQGSNDMEIRAEGNSRFTYNVLEDSC
TKHTGEWGRTVVEYRTQKTSRLPFVDVAPMDVGGPDQEFGLDIGPVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacatgttggctgcaaggaacctgctgctgctgctgatcgcggcacaagcgcta
ctggtgaccgtggtgaaatgtcaagatgacctcagcgaggatggcagctgtgtgcaggac
gggcagcgctacagcgacaaggacgtgtggaagccgcagccctgcagcatctgtgtctgc
gacagtggcagcatcctgtgcgatgacatagtctgcgagccgctctatgactgccccaaa
acggagattccctttggggagtgctgccctgtctgcgcgtccagtcagccctcatccggg
ccgtcaagagtaaggggacaaaagggtgagccaggagaagtgcctgaaacacaaggtctc
agaggaccctcgggaccacagggcccacctggtgagcagggactgagaggaaaccgagga
gacaagggagaaaagggaactctggggcctcgcggcagggatggcgaacccggaacaccc
ggaaaccctggagcagcaggcccgcccggtcccccaggaccacccggacttggagggaac
tttgccgctcagatggcaggtggctttgatgagaagtctggtggcgctcagctcggtgct
ctgcaaggccccatgggacctatgggaccaagaggacctcccggaccatccggatcccct
ggccctcaaggattccaaggatctcctggcgaacccggagagactggcaccgctggccct
ctgggaccaaggggtccacctggcccagctgggaaacctggtgacgatggcgatgctgga
aaacctggaaaatctggcgagcgtggccccgcaggcccacagggtgcaagaggtttcccc
gggacgcccggtcttccaggtgtcaagggtcaccgaggttaccctgggttgaacggagcc
aggggtgaggacggagctgctggtgccaagggcgagaatggagctgcgggagagaatgga
gcacctgggcccatgggtcctcgtggtctgcccggcgagaggggtcgaacaggacctgct
ggaccagccggtgctcgtggatctgatggccaagccggagctgctggcccccctggccca
actggacccgctggatctcctggcttcccaggtgctcctggaaccaagggagaggcaggc
cccactggagcaagaggacccgaaggagcgcaaggtgcacgaggagaaggaggcgccccc
ggctcttccggacccagtggagctcccggaaatcctggaactgatggtctcccaggcgcc
aaagggtcatctggtgctcctggtattgctggtgctccaggtttcccaggaccacgtggg
gctccagggccacagggggcgactggaccatctgggcctaaaggtcaacagggtgaacca
ggtgctcatggtttcaagggtgaggctggacccaagggagagattggaccagccggtctc
caaggacctcctgggcaggcgggtgaggaaggcaaacggggagcacgtggagaacccgga
gcagctggtcctaacggtcctcccggcgagagaggagctcctggcaaccgtggattccca
ggtcaagatggacttgctggaccaaagggtgcacctggcgagagaggcccatcgggtcct
gctgggccaaagggggccaacggagaccccggccgacctggagaggctggcctacccggt
gcccgcggtctgacaggcagtccaggtagcccaggggctgaaggaaagctgggccctcag
ggtgctccaggtgaggatggacgacctgggccacctggcccccagggtgctcgcggccag
cccggagtcatgggcttccccggacctaagggcgctggcggagagcctggcaagcctgga
gagaagggaatccctggtgcccctgggctcaggggcctgccaggaaaggatggcgagact
ggcgctcagggtcctcccggccccgctggcccagctggtgagcgaggtgaaggtgggcca
cctggacctcctggcttccagggtcttcccggacctagcggtcccccaggagaggctggc
aaaccaggtgctcagggtgtcccaggtgaagcgggcaaggttggagtttcaggtgcaagg
ggtgagcgtggcttccccggtgagcgaggggctccaggaccccagggtctgcagggcgca
cgaggccttccaggaactcccggcactgacggtcccaagggtgcgacaggtcccggcggt
cccccaggagcacagggccccccaggccttcagggcatgccgggcgagcggggggcgacg
ggcatttccggcgccaagggagacaggggagattctggcgagaaggggccggagggcgct
cccggcaaggacggaggcaggggtgtgaccgggcctattggaccacctgggccagccggt
gctcacggtgacaagggtgatgctggtcctgctggaccaactggaccatctggagcccgt
ggggcacccggagagcgtggagagactggaccacctggacctgccggctttgctgggcct
cctggctcagacgggcagcccggtgccaagggagagcagggcgagaccggacagaaggga
gatgctggtgccccaggtccccaggggccatcaggtgcccccgggccccagggtcctaat
ggcgtttctggtccgaaaggtgcacgaggtgctcaaggtccccctggagcgaccggcttc
cctggagcagctggcagagtcggacccccaggtcccaatggtaacccaggatcccctggc
ccagctggccccaacggaaaggacgggcccaagggcatccgtggtgactcaggccccgtg
ggccgcgccggcgagccagggcttcagggaccgatcggcgcccctggagagaagggagac
gccggggaggacggcccacctggtccagacggcccccctggtgcccagggtctttcggga
cagcgaggtattgtgggtctgcccggtcagcgcggtgagaggggattccctggtcttccc
ggacctgcgggagagcctggcaagcagggttcgacgggagcatctggagagaggggccca
cctggcccagtcggcccacctggtctgagcggtccacctggggagcaaggacgtgaagga
aacgctggttctgatggagccccaggtcgcgatggtgccgctggagcaaagggcgagcga
ggggaggcaggagcggccggccagcccggagcacccgggtcacccggggcacccggcccc
gttggtcccaccggcaaaaatggcgcccgaggagatcagggccctcaaggccccatgggt
ccacctggtccctctggtgcccgcggactgccgggcccacaaggtccccggggagacaag
ggtgagacaggagaggctggagagaggggcatcaagggacaccgaggattcaccggactt
cagggactccccggcccaccgggttcttcaggtgaccagggtctcgcaggcagcgttggt
ccatctggtcccagaggtctttctggccccaccggccctccaggaaaggatggaaacaac
ggccagtccggccccatcggccctccaggtcctcgcggtcgcactggcgaaactggccct
gcgggtccttctggtccagccggtctcccaggtcccccaggcccacccggcccaggcatc
gacctctccgccattgctggcatcggccagaccgacaaggccccagatcccctgcgctac
taccgcagcgaccaggccttgcccgagctgaggcagcacgacgccgaggtggacgcctcc
atcaagtctctgagcgggcagatcgaggggctgcggagtcccgagggcacccgcaagaac
ccggcgcgcacctgccgtgacctcaaactctgccaccccgaatgggagagcggaaactac
tggatcgaccccaaccagggctgcactctggatgccctgaaggtgttctgcaacatggag
accggcgagacgtgcgtgtacgccaacccacagaccatctcccgcaagaactggtggcag
agcaagagcgccgaccgcaagcatgtctggtttggcgaggccatgagcggtggcttacac
tttaactacggcgatgacaacctgccagccaacacggccgccatccagatgaccttcctg
cggctgctgtccatggaggcatcgcagaacatcacgtaccactgcaagaacagcatcgcc
tacatggacgaggagacgggcaacctcaagaaggcgctgctgttgcagggctccaacgac
atggagatccgcgcggagggcaactcgcgctttacctacaacgtgctggaggacagctgc
acgaaacacacaggggagtggggcaggacggtcgtcgagtaccgcacgcagaagacctcg
cggctgccgtttgtcgacgttgctccaatggacgtcggcggccctgaccaggagtttggc
ctggacatcgggcccgtctgcttcctgtaa
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