Petromyzon marinus (sea lamprey): 116944274
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Entry
116944274 CDS
T09614
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116944274 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116944274 (EXOSC7)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116944274 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
116944274 (EXOSC7)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116944274
NCBI-ProteinID:
XP_032813704
UniProt:
A0AAJ7TAA0
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Position
20:complement(13734499..13740851)
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AA seq
292 aa
AA seq
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MAALLMLSEAEKAFIVHGVQDGVRGDGRGCEDFRVVELETEVVSNTSGSARLRLGQTDVL
VGVKAELGSPRLDCPDEGYLEFFVDCSANATPEFEGRGGEDLSLEISSALQRSFAHAGCL
DLRSLCILPRQQCWVLYVDVLLLEYGGNVFDAASIAVKAALFNTRIPTVHVSEDEEGVRE
IELSDDPYDCVRLEVARVPCIVTLSKIGQRHVVDASLEETCCCRASLMVSVTAAGAITGL
RKAGPGSLHPDSVCHMIETGKRVGVSLHKALDAVLQHEESQGTKREKVGFLG
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcggccctgctgatgctaagcgaggcggagaaggccttcatcgtgcacggcgtgcag
gacggagtccgcggggacgggagaggatgcgaggacttccgcgtggtggagctggagacc
gaggtggtgtccaacacgagcggctccgctcgcctccgcctgggtcagacggacgtattg
gtgggagtgaaggctgagctgggctcgccgcgtctggactgccctgatgagggatacctg
gagttcttcgtcgactgctccgcgaacgccaccccggagtttgagggccggggcggcgag
gacctgagcctggagatctcgagcgcgctgcagcgctcgtttgcgcacgccggctgtctc
gacctgcgctcgctctgcatcctcccgcgccagcagtgctgggtgctctacgtggacgtg
ctgctgctggagtacggaggaaacgtgttcgacgccgcctccatcgccgtcaaggccgct
ctcttcaacaccaggatcccgacggtgcacgtgagtgaggacgaagagggcgtgcgggaa
atcgagctgtccgacgacccctacgactgcgtgcgcctggaggtggcgcgcgtgccgtgc
attgtcacgctcagcaagatcgggcagcggcatgtggtggacgcgtcgctggaggagacc
tgctgctgccgcgccagcctcatggtgtccgtgacggcggcgggcgcaatcaccggcctg
cgcaaggccgggcccggcagcctccaccccgacagcgtgtgtcacatgatcgagaccggc
aagcgagtgggcgtgtcgctgcacaaggccctggacgccgtcctgcagcacgaggagtcg
caaggcaccaagagggagaaagtcggcttcctcggatga
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