Petromyzon marinus (sea lamprey): 116944281
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Entry
116944281 CDS
T09614
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116944281
04121 Ubiquitin system [BR:
pmrn04121
]
116944281
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116944281
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116944281
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116944281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
SGL
zf-C3HC4
zf-B_box
zf-RING_UBOX
ANCHR-like_BBOX
zf-RING_5
zf-RING_2
zf-C3HC4_2
Baculo_PEP_C
zf-C3HC4_3
COG5_N
ATG14
DUF5711
DUF3826
TPR_MLP1_2
zf-UDP
FapA
Motif
Other DBs
NCBI-GeneID:
116944281
NCBI-ProteinID:
XP_032813718
UniProt:
A0AAJ7T9B8
LinkDB
All DBs
Position
20:complement(14014465..14039928)
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AA seq
840 aa
AA seq
DB search
MAAFGAGPVESQRCPLCPEGPGVVRRSPAGGAGTQAPAAAAPKPPLRVLPCLHAFCGPCL
EARRRRDGRLACPTCRRDAALGDAGVHGLPSAHLLLTCLLGGVADGAGGVGRGSGGCGAA
GAGGGGVELKGLLLDVSHAEMGAAAAGGEAGPHHERDAVSPLCGVCGHGVKGPAGARCLV
ERFQSGLRLGPAGPHAPGSPQPGLAALGPRASPLGLPSFPSPPLAAFPGLGPGAQWPGYC
QHPEDEAGRLFCETCALSLCRECARDGHSSHEVVYLPVPSHDSRSLALQMLTDAQQGRQA
IQLGLDRAQAMVEQVEMRAQQVRAEVKAVVSVHRKALDERECELLRKVEKIRQVKTQTLQ
RQLEELRQSLARLDSAVESVRAALEAGADAEALGAVRARVAAQLRDIVGLGTAGAPSPPQ
QPQEDDRVVFVPPDAALYAAIRTLGAVQSGACPELSTVAGEGLTKVVKGRLASFTVVTRD
HGGEFRRTGGDPVCAAALGPDGRAAWAEVRDKQDGTYGVSYRPAADGEHTVSVTVLGRHV
EGSPFRVLVRPGRSYAGIGKPAITFGGGGTGDGQLCRPWGVCVDSEGRVIVADRSNDRIQ
VFGPSGGFLFKFGAHGSHPGQFDRPAGVAWDPGRGGRIVVSDKDNHRVQIFSGEGRVLST
FGERGSESGQFCYPWDVAVSPGDGLILVSDTRNHRVQLFSPDGAFVNKYGFEGALWKHFD
SPRGVAFDAEGRLLVTDFNNHRLLVVRPDCRSARFLGGSGSGPGQFLRPQGVAVDPEGRI
AVADSRNHRVQVFEPDGAFLCQFGAPGGGPGQMDRPSGVAVTPEGLIVVVDFGNNRVVVY
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccgcattcggcgctgggcccgtggagtcgcagcgctgccccctgtgcccggagggc
cccggggtggtccggcggagtccggccggaggggccggcacccaggccccagcagccgcg
gccccgaagcccccgctgcgggtgctgccgtgcctgcacgccttctgcgggccctgcctg
gaggcgcggcggcggcgtgacgggcggctggcgtgccccacgtgccggcgggacgcggcg
ctgggcgacgcgggggttcatgggctgccctcggcccacctgctgctcacctgcctcctc
ggcggcgtggctgacggcgccggcggtgtaggaagaggttctggaggatgtggagcagcg
ggagcaggaggaggaggcgtggagctcaaggggctcttgctggacgtgtcccacgccgag
atgggggccgctgccgcgggcggcgaggccgggccccaccacgagagggacgcggtgtcc
cccctgtgcggggtgtgtggccacggcgtgaagggccccgcgggggcgagatgcctagtc
gagagatttcagagtggcctgaggctcggccccgcggggccccacgccccggggtccccg
cagcccgggctcgcggcgctgggtccccgggcctccccgctggggctgccctccttcccg
tcgcctccgctcgccgccttccccggactcggccccggggcgcagtggcccgggtactgc
cagcaccccgaagacgaggccggacgcttgttctgtgagacgtgcgcactgtcgctgtgt
cgcgagtgcgcacgggacggtcactcgagtcacgaggtggtctacctcccggtaccttca
cacgactcgcgatcgctcgcgctgcagatgctcacggacgcgcagcagggccggcaagcc
atacagctgggcctggaccgtgcgcaggcaatggtggagcaggtggagatgcgggcgcag
caggtgcgcgccgaggtgaaggcggtggtgtccgtgcaccgcaaggcccttgacgagcgc
gagtgcgagctgctgcggaaggtcgaaaagatccgccaggtgaagacgcagacgttgcag
aggcaactggaggagctgcggcagagcctggcgcgactcgactccgccgtggagagtgtg
cgtgccgccctggaggccggggcggatgccgaggccctcggggccgtgcgggcccgcgtg
gctgcccagcttcgggatatcgtggggctgggcaccgccggggccccttcgcccccacag
cagccacaagaggacgaccgcgtggtgttcgtgccgcccgacgcagcgctctacgccgcc
atccgcacgctgggtgccgtgcagagcggggcctgccccgagctttccaccgtggctggg
gagggcctaaccaaagtggtcaaagggcgcctggcgtcgttcacggtggtgacgcgtgac
cacggcggggagttccggcgcacgggcggggaccccgtgtgcgccgcggcactgggcccg
gacgggcgcgcggcgtgggctgaggtgcgggacaagcaggatggcacctacggcgtgagc
taccggcccgccgccgacggcgagcacaccgtgtcggtcaccgtgcttggccggcacgtc
gagggaagccccttccgcgtgctcgtgcggccgggacgcagctatgccggcatcggcaaa
ccggccatcacattcggaggtggcggcacgggggatggtcagctgtgtcgtccgtggggg
gtgtgcgtggacagcgagggtcgtgtgattgtcgccgacaggagcaatgaccgcatccag
gtgttcggtcccagcggaggtttcctcttcaagtttggcgcccacggttcccaccccggc
cagttcgaccgcccggcgggcgtggcctgggacccgggccggggcggccgcatcgtggtg
tcggacaaggacaaccaccgcgtgcagatcttctccggcgaaggtcgcgtgctctccacg
ttcggcgagcgcggtagtgagagcggtcagttctgctacccgtgggacgtggcggtgagc
cccggcgacggcctcatcctcgtatccgacacgcgcaaccaccgcgtgcagctcttctcg
cccgacggcgcctttgtcaacaagtacggtttcgagggtgcgctttggaagcactttgac
tcgccacgtggcgttgccttcgacgccgagggccgcctcctcgtcaccgacttcaacaac
caccggctgctggtggtgcggcccgactgccgctcggcacgcttcctgggcggctccggc
tcagggcccggccagttcctgcggccgcagggcgtggccgtggaccccgaaggccgcatc
gccgtggccgactcgagaaaccaccgcgtgcaggtgttcgagccggacggcgccttcctg
tgccagttcggagcgccgggcggcgggcccggtcagatggaccgcccgtcgggcgtggcc
gtcactcccgagggcctcatagtggttgtcgacttcgggaacaatcgcgtggtggtgtac
tag
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