Petromyzon marinus (sea lamprey): 116944918
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Entry
116944918 CDS
T09614
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116944918 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116944918 (XAB2)
03041 Spliceosome [BR:
pmrn03041
]
116944918 (XAB2)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116944918 (XAB2)
Spliceosome [BR:
pmrn03041
]
Complex B
Other components
Prp19-related factors
116944918 (XAB2)
Complex C
116944918 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_15
TPR_8
ARM_TT21_C
ARM_TT21
TPR_16
RPN7
TPR_1
Motif
Other DBs
NCBI-GeneID:
116944918
NCBI-ProteinID:
XP_032814718
UniProt:
A0AAJ7WZR4
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Position
22:complement(5528574..5544585)
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AA seq
871 aa
AA seq
DB search
MVSAGPTEAEGPVKKTAKAPPPTTNKKKGGDTDIFFEEDDLPYEEEIIRNPYSVKCWLRY
VEFKQGATNQVVNLVYERALKELPGSYKLWYNYLKLRRKQVKGKCITDPAFEDANNCHER
ALVFMHKMPRIWLDYCQFLMDQCKITRTRRTLDRGLRALPITQHMRIWPLYLKFVGMYPL
PETAVRVYRRHLKLCPENAEEYIKYLVSIDRLDEAAIRQATIVNDERFISKAGKSNHQLW
HDLCELISKNPDKVKSLKVGAIIRGGLTRFTDQLGQLWCSLADYYIRSGHFEKARDVYEE
AIQTVTTVRDFTQVFDAYAQFEESMISAKMEASGEQGASEDDDLDVELRLARYEQLMDRR
PLLLNSVLLRQNPHNVHEWHKRAKLYEGKPREIINTYTEAVQTIDPVKATGKPHTLWVAF
AKYYEENDQIEDARTIFEKATKVALKSVDDLAGVWCEFAEMELRHENYDEALRLLRRATA
MPSRKADYFDTSEPVQNRLYKSLKVWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQII
INYAMFLEEHNYFEESYKAYERGIALFRWPNVFDIWNTYLVKFIERYGGKKLERARDLFE
QALEGCPPKFAKSFYLLYAKLEEEHGLARHAMAVYERGTRGVEPSEQYSMFNIYIKRAAE
IYGVTHTRAIYEKAIEVLQDDHAREMCMRFADMECKLGEIDRARAVYSYCSQMSDPRTTL
SFWQTWKEFEIKHGNEDTVREMLRIKRSVQATYNTQVNFMAAQMLAASSTTTGTVADLAP
GHGPVDEMKLLEQKAQLLAAEAAKDKPKSKEKILFVRSDTSKSELSELAKQSNPDEIHID
SDNDEEAGEPDEVQVEQKAVPSEVFGGLKED
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccgcggggccgaccgaggcggaggggccggtgaagaagacggcgaaggcgcca
ccgccgacgacgaacaagaagaaggggggcgatacggacatcttcttcgaggaggatgat
ctcccctacgaggaggagatcatccgcaacccgtactcggtcaaatgctggttgcgctac
gtggagttcaagcagggagctaccaaccaggtcgtcaacttggtgtacgagcgggcactc
aaggagcttcccgggagttacaagctatggtacaattaccttaagctgcggcggaaacaa
gtgaaggggaaatgcatcacggaccctgcgtttgaagacgcaaacaactgtcatgagagg
gcgctggtcttcatgcacaagatgccgcgaatatggctggactactgccagttcctgatg
gaccagtgcaagatcacccgtacgcggcgcacgctcgaccgagggctgcgcgccctgccc
atcacgcagcacatgcgcatttggccgctctacctcaagttcgtgggcatgtacccactg
cccgagacggccgtccgtgtctacaggcggcatctgaagctttgtccagagaatgcagag
gagtacatcaagtacttggtctccatcgaccgtctggatgaagcggccatccgtcaggcc
acgatcgttaatgacgagcgcttcatttcaaaggctggcaagtcaaaccaccagctgtgg
cacgacctgtgcgagctcatttccaagaacccggacaaggtcaagtcgctgaaggtgggg
gccatcatccgcggcgggctgacgcgcttcacggaccagctgggacagctctggtgctcg
ctggccgactactacatccgcagcggccactttgagaaggcgcgggacgtgtacgaggag
gcgatccagacggtgacgacggtccgtgacttcacgcaggtgttcgacgcgtacgcccag
ttcgaggagagcatgatcagcgccaagatggaggcatcaggagagcagggagcgagcgaa
gatgatgacttggacgtggagctgcggctggcgcggtacgagcagctcatggaccggagg
ccgctcctcctcaacagcgtcctgctgcggcagaatccccacaacgttcacgagtggcac
aagcgcgccaagctctacgagggcaaaccaagagagattatcaacacgtacacagaggcg
gttcagaccatagaccccgtgaaggccaccggcaagccgcacacgctctgggtggcgttc
gccaagtactacgaagagaacgaccagattgaagatgctcgcaccattttcgagaaggcc
accaaggtggcgctgaagagcgtggacgacctggcgggcgtctggtgcgagttcgccgag
atggagctgcgtcacgagaactacgacgaggccctgcgcctcttgaggcgagccacagct
atgccgtcccggaaggcggattactttgacacgtcggagccggtacagaatcgactgtac
aaatctctgaaggtgtggtccatgctggccgacctggaggagagcctgggcacctttaag
tcgacaaaggcggtttacgatcgcatcattgatctccgcattgctacgccacaaataata
atcaactatgccatgtttctggaagaacacaactactttgaagaaagctataaggcatac
gagcgagggattgctttgttccgctggcccaacgtgtttgacatctggaacacctacctg
gtgaagttcatcgagcgctacggtgggaagaagctggagagggctcgagatctgtttgag
caagcactggaaggctgtccacccaagtttgcaaagagcttctacctgctgtacgccaag
ctggaggaggagcacgggcttgcgcgacacgccatggcggtgtacgagcgcggcacgcgt
ggcgtcgagccctcggagcagtactccatgttcaacatctacatcaagcgcgccgccgaa
atctacggcgtcacgcacacgcgcgccatatacgagaaggccatcgaggtgctgcaagat
gaccacgctcgcgagatgtgcatgcgtttcgccgacatggagtgcaaactcggggagatt
gaccgggccagggccgtctactcatactgctcgcagatgtcggatccccgcaccacattg
tccttctggcagacgtggaaggagtttgagatcaagcatgggaacgaggacacggtgcgg
gagatgctgcgcatcaagcgtagcgtgcaggccacctacaacacgcaggtcaacttcatg
gcggcacagatgctagcggcctcatccactaccaccggaacagtggctgaccttgcacct
ggacacggccccgtggatgagatgaaacttctggagcagaaagctcagcttttggctgcc
gaggctgccaaggacaaacccaagagcaaggagaaaattctcttcgtcaggagcgacacg
tccaagagtgagctgtccgagctcgccaagcaaagcaaccccgatgagattcatatcgac
tctgacaacgacgaggaagccggggaacctgacgaggtgcaagtggaacagaaggcggtg
cccagcgaggtgtttggaggcctcaaggaggactga
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