Petromyzon marinus (sea lamprey): 116944966
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Entry
116944966 CDS
T09614
Symbol
VPS50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116944966 (VPS50)
Membrane trafficking [BR:
pmrn04131
]
Protein recycling
Others
EARP complex
116944966 (VPS50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
116944966
NCBI-ProteinID:
XP_032814857
UniProt:
A0AAJ7TBL5
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All DBs
Position
2:4106818..4223537
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AA seq
961 aa
AA seq
DB search
MQKIKSLMSRQVSKSFSENLSESASQHEPPKTPHKEELPDTPCNPEAEQEVIDSIEKVYF
DDEAFDPVRYELEKLPEVMQLAELEEYRDRLKRQQAVVSKKVADLILEKQSAYVQELSRV
TELQTSLHEAKAICCDGRRQLGVAQQGFTAASLGLLANQRKRQLLIGLLKSLRTIKTLQR
TDVRLSEMLEEEDFPAAIQLCLECQNAVSSFSHYSCISELNSKLQDTLEQIEEQLDVALA
KTCKLFDVVHYTKVQTAYRLLDKTQTAMDQMHMHFTQAIHNTAFQVVLGYVELCASGADT
RFHKLQYKDLCSHVTVDSYIPCMTDLCKALWEVMHSYYQTMEWHREHDGEVSLPEAEERG
FDRSYVQKKLEHGLTRIWQDVQQKVKTYILGTDLAHFKYDDFIFVLDIINRLMDIGDEFC
SSKSEGLQESIRKQSLNYFKNYHRTRMEELRMFLENEAWELCPVRSNFSIFQLHEFKFLA
QGRGGSVGLVPTASPSKVAATPGATPTTPVIGSFPSHCNPFESLRQDQDDDSDDVLAANG
YDSEEGEKSPYQDEDSDSDIADELKRDFVDEQTGETPVRSVSKDSVRVKRKSESHYSLNK
MNAPILANTTLNFIRLFGRYLQMMSVLQPIAFDVVQYMSQLFDYYLYAVYTFFGREHMFE
TTGLGLISNRLRTTLNRIQESLIDQEAQTDPVVSVPEERREKVPCPHLSRLVDLTRTDTL
YGLSERIVATESLVFLAEQFEFLQNQLDAMIPQAKKPFLQQFYSQTVSTVGELRKPVYWM
VAAKAIDYENALLLMAGVKWDVREIMSQHSPYVDSLLKEFEAFSRRLAEISKRVRIPVPV
SNVLWEHCIRLANRTLVEGFASAKKCSTEGRALMQLDFQQFLLKLERLTDLRPIPDKDYV
ETYIKAYYLTEGDMERWIKEHREYSSRQLNSLVNVCVGTHINKRAKQRLLTAIDESDRPK
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaagtcgctcatgagccggcaggtctccaagagtttttctgagaatttg
agtgaaagtgcatcacaacatgaacctccgaagactccacacaaggaggagctgccagat
accccttgtaaccccgaggcagagcaggaggtgatcgacagcattgagaaggtctacttt
gacgatgaggccttcgaccccgtgcgatatgagctggagaagctgcctgaggtgatgcag
ctggccgagctggaggagtaccgggacaggctgaagcggcagcaggcagtggtgtccaag
aaggttgctgacctgatactggagaagcaatcagcctatgtacaggaactcagcagggtg
accgagctgcagaccagcttgcacgaagccaaggccatctgctgtgatgggcggcggcag
ctgggggttgcccagcaaggcttcacggctgccagccttggcctgctcgccaaccagcgc
aagcggcagctcctcatcggtctactgaagtccttgcgcaccatcaagacgctgcaaagg
acagatgtccgactgagtgagatgctagaggaagaagatttccctgctgccattcagctc
tgcctcgagtgccagaatgctgtcagttcattcagccactactcttgcatcagtgaactc
aattcaaagcttcaggacaccttggagcaaattgaggaacagctggacgtggcattggcc
aagacatgcaagctgttcgatgtcgtgcactataccaaggtgcagacggcgtaccgactg
ctggacaagacacagactgccatggaccagatgcacatgcatttcacgcaggccatccac
aacacagcctttcaggtggtgcttggctacgtggagctgtgtgcttccggcgctgacacc
cgcttccacaagcttcagtacaaggacctgtgctcgcacgtgaccgtggacagctacatc
ccctgcatgacggacctgtgcaaggcgctctgggaggtgatgcacagctactaccagacc
atggagtggcatcgcgagcatgacggtgaggtgtcactcccagaggcggaagaacgaggc
tttgatcgcagctatgtgcaaaaaaagctggagcacggccttactcgtatctggcaggat
gttcagcagaaggtcaaaacctatatcctgggaaccgacctggcgcactttaaatatgac
gacttcatatttgtgctggacatcattaaccggttgatggatattggcgatgagttttgc
agcagcaagtcagagggtctgcaggagtccatccggaagcagagcctcaactatttcaag
aactaccacaggactcgcatggaagagctgcgaatgtttttggagaatgaggcatgggaa
ttgtgtcctgtgcgctccaacttcagcattttccagctgcacgagtttaagttcctagca
cagggccgaggaggcagtgtcggtctggtacccacggcctcacccagcaaggtggcagcc
actcctggtgccacccctacgacccccgtgattggaagcttcccctcccactgcaacccc
tttgagagtctccggcaagaccaggacgacgactcggatgacgtgctcgcagccaacggg
tatgactcggaagaaggagagaagagtccgtaccaggatgaggacagcgacagcgacatt
gctgacgagctcaagagggactttgtggacgagcagactggagagacacctgtcaggagc
gtttcgaaggactctgtacgagtgaaaagaaaatcggagtcacactacagcttaaacaag
atgaacgctcccattcttgccaacaccactctcaacttcatccgcctcttcgggaggtac
ctgcagatgatgagcgtgctgcagccaatcgcgtttgacgtggtacagtacatgtcgcag
ctcttcgactactacctgtacgccgtgtacacattcttcggacgcgagcacatgttcgag
acaacaggactggggttgatcagtaaccgcttgcgcacaaccctcaatcgcatccaggag
agcctcattgaccaggaggctcagacagaccctgtggtgagtgtgccagaagagcgaagg
gagaaggtgccctgcccgcacctcagccggctggtggacttgacacgcacggatacgctg
tatggtctctcggaaaggatcgttgccaccgagtccctggtgttcctggcggagcagttt
gagtttcttcagaaccagctcgatgctatgatccctcaagccaaaaagcccttcctacag
cagttctactctcagactgtgagcacggtgggcgagctgcgcaagccggtctactggatg
gtggcggccaaggccatcgactacgaaaatgcgctgctgctcatggccggcgtcaagtgg
gacgtgcgcgagattatgtcacagcacagcccctacgtggactcgctcctcaaggagttt
gaggcgttcagcaggcgactggcagagatatccaagagagttcgcatccccgtgccggtc
tcgaacgtactgtgggagcattgcatccgcctagcaaaccgcaccctggtggagggattc
gcgagcgccaagaagtgcagcacggagggacgagcgctcatgcagctcgacttccagcag
ttcctgctcaagctggagcgactcacagacctccgtcccatcccagacaaggactatgtg
gagacgtacatcaaggcctactacctgaccgagggggacatggagcgctggatcaaggag
caccgggagtactcgtcccggcagctgaacagcctggtgaacgtgtgtgtgggaacacac
atcaacaagcgcgccaagcagcgcctgctcaccgccattgacgagtccgatcgccccaag
cgctag
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