Petromyzon marinus (sea lamprey): 116945663
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Entry
116945663 CDS
T09614
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116945663 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116945663 (CNOT4)
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116945663 (CNOT4)
04121 Ubiquitin system [BR:
pmrn04121
]
116945663 (CNOT4)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116945663 (CNOT4)
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116945663 (CNOT4)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116945663 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116945663 (CNOT4)
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116945663 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
zf-C3HC4_3
RRM_1
zf-UDP
zf-RING_2
zf-C3HC4_2
DZR_2
Torus
Rtf2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
116945663
NCBI-ProteinID:
XP_032816083
UniProt:
A0AAJ7X120
LinkDB
All DBs
Position
24:complement(13772989..13787521)
Genome browser
AA seq
821 aa
AA seq
DB search
MSASPVSGEEPSECPLCMEPLEIDDVHFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
SENPAVYKPLSTEELQRIKSEKKQKQNERKHKLSENRKHLGSVRVVQRNLVFVVGLSQRL
ADHEVLKRPEYFGKFGKIHKVVVNNSTSYAGSQGPSASAYITYVRWEDALRAIQAVNNVQ
ADGRTLKASLGTTKYCSYFLKSAQCPKPDCMYLHELGDEAASFTKEDMQAGKHQDYEQKL
LSDLAKSGPAAPPATTNSSLLPPNAAPPPSCDKNGRGRQTGTFRPGSSNKENWPSLANPG
SLASENGVGGEGSPSSTPSPDLSPEMHTTTEHRPPDNHTTDAQSNHQSSSSPTQSGSGNS
ADLDGGISLTPSPPPGLPSPRPAFDPVPGGVSAGIGLGLGGPESSQSLFSSSSNPFRHRL
VGMGLPLPDLVPHTPDWLGAPSLSEPMPEAPFTSETIPVSSATDWQAAFGFGSSKTQDDD
LGFDPFDVTSKALADLMEKELSLSCAPLTVSSVTAHGPPGFHNHHLHNRHAYAHANGLLG
GHANGLLPAANGVAFVPARGYAARPSAALPLGFPLWNPARLAHHPHGAPGRQPPSPTASQ
PPTSSAASVPAYGVEPSLAARHGPGTDTDGASSDSHKEWQDSLRALLPNVNISFGGLPPG
LPHGSNPPQPPGPHTAGTASGPGAAKVEPMWPGDNGWMDPAIITGIPACGGLVPECLDES
PPHWLKSLQALTEQDCPLSPPPAPRTTGAPPPHYLTHTNPAAHAGMLRPGWGAVHPHANM
APFAGLGPLSRRTPPPGFQPALGPTNKPPADFLQSLATNQH
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgagtcccgtgagcggcgaggagcccagcgagtgccccctgtgcatggagccg
ctcgaaattgacgatgtgcacttcttcccctgcacatgcggataccagatctgccgcttc
tgctggcaccgcatccgcactgacgaaaacggcctatgcccagcctgtcgcaagccctat
tcagaaaatccggctgtgtacaaaccgctgtcgacggaggagctgcagagaataaagagc
gagaagaagcagaagcagaatgagcgcaaacacaagctgtccgagaaccgtaaacacctg
ggcagcgtgcgtgtggtgcagaggaacctcgtctttgttgtcggactatcgcagaggctg
gctgaccatgaggtgttgaagcggcccgaatactttgggaagtttggaaaaatccacaag
gtggtcgtcaacaacagcacgtcctacgccggctcccagggcccgagcgcgagtgcgtac
atcacgtatgtgcgatgggaggacgccctgcgtgccatccaggctgtcaacaacgtgcag
gccgatgggcgcacgctcaaggcatcgctgggaaccaccaagtactgcagctacttcctg
aagagcgctcagtgccccaaaccggactgcatgtacctacacgaactgggtgacgaggct
gccagcttcaccaaggaggacatgcaggctggcaaacaccaggactatgaacagaagctc
ttgtcagacctcgcaaaatccggcccagctgcacccccggccaccaccaactcgagcctt
ctgcctcccaacgccgccccccctcccagttgtgacaagaatgggcggggccgacaaacg
ggcaccttcaggccgggcagcagcaacaaggagaactggccgtcgttagcaaacccggga
agtttggcgtcggagaatggagtagggggtgaaggcagcccgagctcaacacccagtcca
gacctcagcccagagatgcacacaactacagaacacagacctccagacaatcacactaca
gatgcacagagtaatcaccagtccagtagcagccccacacagagcggcagtgggaacagt
gctgacctggacgggggaattagcctgaccccatcaccacctcccggcctcccaagccct
cggcctgcatttgaccccgtgccgggcggggtaagcgctggcatcggcctggggctgggt
ggccctgagagctcgcagtccctcttctcgtccagctccaacccattccggcaccggctc
gtgggcatggggcttcccttgccagacctggtgccgcacacgccagactggctcggagca
cccagcctgtccgagccaatgccggaggcgcctttcacatccgaaaccatccctgtgtcc
tcggcgacggactggcaagccgcttttgggtttggctcctcgaagacacaggacgatgat
ctgggcttcgacccttttgacgtcaccagcaaggcgctcgccgacctcatggagaaggag
ctctccttgtcctgcgctccgctcacggtgtcgagtgtaaccgcgcacggtcccccgggg
ttccacaaccaccaccttcacaaccgccacgcctacgctcacgccaacggcctgctgggc
ggtcatgccaacggcctcctcccggcggctaacggcgtggcgttcgtgccggcacggggc
tatgcagcgcggcccagtgcggcgctgcccctcggcttcccgctatggaacccggcgcgg
ttagctcatcacccgcacggcgcgcccggaaggcagccaccgtcgccaaccgcgtcgcaa
ccgccgacctcatccgcagcctctgtgcccgcatacggtgtggaaccctcgctcgccgca
cggcacggccctggcacagacactgacggcgcctcgagcgactctcacaaggagtggcag
gacagcctccgtgcactgctccccaacgtcaacatcagttttggggggctgccccccggt
ttgccccatggctccaacccaccccagccccctggcccccacactgccggcacagcgagc
ggacccggtgcagccaaggtggagcccatgtggccaggggacaacggctggatggaccct
gccatcatcacaggcatccctgcgtgcggggggctggtgccggagtgcctggacgagagc
cccccacactggctcaagtccctgcaggcgctcaccgagcaggactgccccctgtcccca
ccgccggctccgcgcaccaccggcgcccctccgccccactatctgacgcacacaaacccc
gcggcgcacgctggaatgcttcggcccggctggggggccgtgcatccccatgccaatatg
gcccccttcgcagggctggggcctctcagcagacgcacaccaccgcccggcttccagcca
gcactcgggcccacaaacaaacctcctgcagacttcctacagagcctggcaaccaaccag
cattag
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