Petromyzon marinus (sea lamprey): 116945726
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Entry
116945726 CDS
T09614
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116945726 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116945726 (EDC4)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116945726 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
116945726 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
DFF40
Motif
Other DBs
NCBI-GeneID:
116945726
NCBI-ProteinID:
XP_032816120
UniProt:
A0AAJ7TFR3
LinkDB
All DBs
Position
25:complement(1447461..1478097)
Genome browser
AA seq
1484 aa
AA seq
DB search
MATRGGVNASDATQQLRDLLKLDRQPEQRDPLSAADPAVVSYNGQLNGMAATAMSEVPGA
ESACSMSAGAVDAAAVLPGPAPHLVDSQQITLTGDDKAGAVPVNAREVVVISSDASSLSS
PSSGSNQVKIQPVTRYDWEHRYYPGNMIAVSSTYLAYIIPKPQAMVRVLHAPTAERTLLK
GFTGAVTDLAFAHLGSSRLACVDEAGNLFVWQFSQDSCGKIATKQLLQAMRPVGTPLSEL
RRIQWCPFIYGNSDRESESDGEEDVGKMLALFHPDRAEAWDQDVIVPTSGPFKPVAVTDI
KNRITTVRGHEGAVNTGALSPDGAILATAGQDGLVKFWQMYAESQDTPSCLHKWEPHNGM
PVSCLLFCDNYKRKEGGEQYWRFVLTGTNQNQELKVWCTVTWTCLQTLRFSPDSAIKLSL
DITAQYLVLSDVQRKVLYVLELIQNKDGHAYFSSLAEYLLTHPMLSFGIREVTPHRAGRQ
SEHQEDGEVDAADGVEDEAEVTGGVLIKINCVHTRALENVQILFCPPSTSGAAPPALSVS
SSASHEDMVLRDRLSDISSDLPIEENSSQSSDFQRTFDDNRRDDILGRVDLGGGAALLSP
GLGGGAGELARPEDFMSPLTPAGALPDDAKLQLKTPDDFMSSLVPKQLGLGSPTGSGSSL
TAVTMIGSNVLSQSPLMSPVSSMTLTPGSSLHSSLSMPPGGPHSGASPLAMADLTNASPP
RELRSPDVISSASSNSTLPQVIPEVASEAVQRGLRDSAEQGARLGSPPEQSGLLGQAGSR
SRSPDAPSRGSFGSMDAPPLDAGPRLVSPLGQSSLGTVAGQRQMPDNVLRGNYSLGRHSP
SEAGAHLAPLARQAAPGQVVGPQRAAEKEDPPRQLYGQQQQQQQEQQQDAASTSPAWPAA
PDLTRETRSGVKVSSDEDLAMRRQRASPSRERQHLTAEQQESQDASSEHSDQDEEVAFLS
SPAGVVAGAGAAGIAGPHRGPPSQPGFRDQKGRVSPRLSPKSRRRATREESERASHPSAS
DQAREDGQAAMLACFTTLQTKLAAIWSRQEEMIHGMEAREEALNNALLSHMEASLAKSRE
QDQTWFTAKLQQHEDRERALQQQLQHNLTQAMSGVVAARLDKGMRDEVKKIFPQAIAKAV
EPLAAQLTSTMAAKLTAAEVSTRDGIAKMVKAKAISDAIGKAAAECLQGPMQVAFREAFQ
GSAAPVFDRACQALMQQINEVFHRGTHEYVQQLESHLAARRQADQGALEGMGTQLQQTLM
AMQASIQQLAPALSASVHTDIQAQMRDVSCSLQEGLTGTVRRVVREEMALALKEQHATVT
NSIMQAVRSAASTPVPSAHHPPIDFRVQQEHIMQLLQQGQINQAFQQALTAADLELVLFV
CETVDPAQVFIPGSCPLTQPVLLSLVQQLSMDLAVHTKTTLRFLEEAVMSLDPQHSITRE
HSATVLVPVQQKMHAFLAADQRGQFSKQARILLMAVGSLLNRHS
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcgcggcggagtgaacgcgagcgacgcgacgcagcagctgcgcgatctcctc
aagctcgaccgccagcccgagcagcgcgatccgttgagcgcggctgaccctgccgtagtc
tcctacaatgggcagttgaatgggatggcagcgacagccatgagcgaggttcccggagcg
gaatctgcctgctcgatgtccgcgggcgcagtggacgcggctgctgtcttaccaggcccc
gctccgcacctcgttgactcgcagcagatcaccctgacaggggacgacaaggcgggtgca
gtgccggtgaatgcgcgtgaggtcgtggtgatttccagcgatgcctccagcctctccagt
ccgtcctctggcagcaaccaggtcaagattcaaccagtgacacgctatgactgggagcat
cgctattaccctgggaacatgattgctgtctcctccacctacctcgcttacatcattccc
aagccccaggcgatggtgcgggtgctgcacgcgcccacggccgagcgaaccctcctgaag
ggcttcacgggcgccgtcacggacctcgccttcgcccacctcggctccagccgcctcgcg
tgtgtggacgaggccgggaacctctttgtgtggcagttctcacaggactcctgcggaaag
atagcaacgaagcagctgttacaggcgatgcggcccgtggggacgccgctgtcggagctg
cgccgtatccagtggtgtcccttcatctacgggaacagcgatcgcgagtcggagagcgac
ggcgaggaggacgtgggaaagatgctcgcgctcttccaccccgacagggcggaagcatgg
gatcaggacgtgatcgtccctacttctggtcctttcaaaccggtagccgtcaccgacatc
aaaaatcgcatcaccactgtgagagggcacgagggggctgtgaatacgggcgccttgtct
cctgacggagctatcttggccaccgccggccaagatgggctggtcaagttctggcagatg
tacgcagagtctcaggacacacccagctgtctccacaagtgggagccacacaatggcatg
cccgtctcttgcctgctgttttgtgacaactacaagaggaaagagggaggtgaacagtac
tggcggtttgtcttgacgggcaccaatcagaaccaggagctgaaggtctggtgtaccgtg
acgtggacgtgcctgcagacgctacgattctcaccagactcggcaataaaactgagcctt
gatatcaccgcccagtacctggttctttcagacgtgcagcgcaaggtgctgtatgtactc
gagctaatccagaacaaggatggacatgcatacttcagttcgctggctgagtacctgctc
acgcaccccatgctgagcttcggcatccgggaagtgacgccgcatcgtgccggccggcag
agcgagcaccaggaggatggggaggtggacgccgctgacggtgtggaagatgaggcagag
gtcactggcggcgtgctcattaagatcaactgtgtgcacacaagagccctggagaatgtg
cagattctcttctgccctccctccacgtctggagccgctcctccggcgctctcagtctcc
agctctgcttcgcatgaagacatggttctgcgggaccggctctcggacatcagctctgac
cttcccatcgaagagaacagctcccagtcatccgacttccagcgcacatttgatgacaac
cgcagggacgacatcctgggaagggtggacctgggtgggggcgccgccctgctgagtccc
ggactcggaggcggcgcgggagagctcgcccgccccgaggacttcatgtctccgctcacg
ccggcgggggccctgcccgacgacgccaagttgcagctcaagacccccgacgacttcatg
agcagcttggtccccaagcagctggggcttggctctccaacgggcagtggcagttctctg
actgcagtgacgatgattggaagcaatgtcctttctcagagccccctcatgtcaccggtg
agcagcatgacgctcacccctggcagcagcctgcacagctctctcagcatgcctccgggg
ggcccacacagcggggcctctcccctcgccatggccgacttgaccaacgcgtctcctccg
cgagagctccgctcgcccgacgtcatctcctcggcctcgtccaattccaccctgccccag
gtcatccccgaggtggcgtccgaagctgtgcagaggggcctgcgggactctgccgagcag
ggcgcccgcctgggctccccgcctgagcagagcggccttcttgggcaggcgggcagccgt
tctcggtcccccgacgcccctagtagggggtcgtttggctcgatggatgcaccccctttg
gatgccggacctcgcctggtctccccactcggtcaaagcagcttggggaccgtcgctggc
cagcgtcagatgcccgacaacgtgctcaggggcaactacagcctcggtcggcattctcca
tctgaggcaggggcgcacctcgctcccttggccaggcaggccgccccgggccaggtggtc
gggccgcagcgggcagctgagaaggaggatcctccgcggcagctgtacgggcagcagcag
cagcagcagcaggaacagcagcaggacgccgcttccaccagccccgcgtggccggcggct
cctgacctcacgcgcgagacccggagtggagtcaaagtcagctcggacgaggacttggca
atgcgccggcagcgagcgtcgccatcgcgcgagcgccagcacctcacggcggagcagcag
gagagtcaggacgcgagctcggagcacagtgatcaggatgaggaggttgccttcctgtca
tcgcccgcgggcgttgtggccggcgcgggggcggccggcattgcggggccgcaccggggg
cctccgtctcagccgggcttccgcgaccagaaaggccgcgtgtcccctcgcctgtctcca
aagtcgcgacgcagggccacccgtgaagagagtgaaagagcatctcatccatcagcttct
gaccaggcgagggaggatgggcaggcggccatgctggcgtgcttcacgacgctgcagacc
aagctggcggccatctggagccggcaggaggagatgattcacgggatggaggcgcgagag
gaggcgctgaacaatgccctcttgagccacatggaggcctcgctggccaagtctcgagag
caggaccagacctggttcaccgcaaagctgcagcagcacgaggaccgcgagcgagcgctg
cagcagcagctgcagcacaacctgacgcaggccatgtccggcgtggtggcagcccgcctc
gataagggcatgcgcgacgaagtcaagaagatcttcccccaggcgatcgcaaaagcggtg
gagccgttggcagcacagctgaccagcacgatggcagccaagctgacggcagcagaggtc
tccacgagagacggcatcgccaagatggtcaaggccaaggcaatttcggatgcgatcggc
aaggcagcagcggagtgcctccagggccctatgcaggtcgccttcagggaggccttccag
ggctcggccgccccggtgttcgaccgcgcctgccaggccttaatgcagcagatcaacgaa
gtgttccaccgcggcacccatgaatacgtgcagcagctggagagccacctggcggcgcgg
aggcaggcggaccaaggtgcgttggagggcatgggcactcagctgcagcagaccctgatg
gccatgcaggcctccatacagcagctggcaccagcgctgtctgccagcgtgcacacggat
atacaggcgcagatgcgtgacgtatcatgcagcctgcaggagggcctaacggggacggtg
cgccgggtggtgcgtgaagaaatggcgttggctctgaaggagcagcacgcgaccgtgacc
aacagcatcatgcaggctgtgcgctccgcggcgagcacgcccgtgccgtccgcgcaccac
ccccccatcgacttccgtgtgcagcaagagcacatcatgcagctgctgcagcagggacag
attaaccaggcgttccagcaggctctgacggccgcagatctggagctggtgctgtttgtg
tgcgagacggtggacccggcgcaggtgttcatacctgggtcgtgccccctcacgcagcct
gtgcttctgtcgctggtgcaacagctgtcgatggacctcgccgtacacaccaagaccaca
ctccggttcctggaggaggcggtgatgtctctggacccccagcactcgatcacgcgcgag
cactcggccacagtgctggtccccgtgcagcagaagatgcatgccttcctcgccgccgat
cagcgcggacagttctccaagcaggcgcgcatcctgctcatggccgtcggctcccttctc
aaccgccactcctga
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integrated database retrieval system
