Petromyzon marinus (sea lamprey): 116946023
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Entry
116946023 CDS
T09614
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116946023 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116946023 (SF3B3)
03041 Spliceosome [BR:
pmrn03041
]
116946023 (SF3B3)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116946023 (SF3B3)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116946023 (SF3B3)
Spliceosome [BR:
pmrn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116946023 (SF3B3)
Complex B
116946023 (SF3B3)
Complex C
U2 SnRNP specific factors
116946023 (SF3B3)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116946023 (SF3B3)
TFTC complex
116946023 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
116946023
NCBI-ProteinID:
XP_032816724
UniProt:
S4R9W9
LinkDB
All DBs
Position
25:13332646..13347620
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRASGITHAIHGNFSGTKQQEIVISHGKILELLRPDPNTGKVHTLLTVEIFG
VIRSLMAFRLTGGTKDYVVVGTDSGRIVILEYQPSKNAFDKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADVDPSGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLIPVPG
GADGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCAATHKTKSMFF
FLVQTEQGDIFKVTLETDEDMVTEIRMKYFDTVPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQVRLLKNLVLVDELDSLSPIMACQIADLANEDT
PQMYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHIEEEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKAIVKCAVNQRQVVIALSGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPSGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPEALCIVEMGGAEKQDESGEKGSL
GGLYLNIGLQNGVLLRTVLDTVTGDLSDTRTRYLGSRPVKLFRVLMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASCFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSTP
LQYTPRKFVIHPDSNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEEERELAAEMAA
AFLNENLPETTFGAPKAGSGQWASVVRALNPIQGNTLELVQLEQNEAAFSVAVLKFSNGG
DDWYVLVGVAKDLILAPRSVAGGFIYTYKLVEDGEKFQFVHKTPVEDVPAAIAPFQGRVL
IGVGKLLRLYDLGKKKLLRKCENKHVANFIVGIHTVGQRVIVSDIQESFFWVRYKRNENQ
LIIFADDTMPRWITTAWQLDYDTMAAADKFGNIAVVRLPPNINDDVDEDPTGNKALWDRG
ILNGASQKAEIIMNYHVGETCLSLQKATLIPGGSESLVYTTLSGGVGILVPFTSHEDHDF
FQHLEMHMRAEHPPLCGRDHLSYRSYYFPVKNVIDGDLCEQFNSMDPAKQRSVAEELDRT
PAEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaatctgaccctgcagagagcaagcggcatcacacacgccatccatggg
aacttctctgggaccaagcagcaggagattgtcatctcccatggcaagatcctggagttg
ttgcggcctgaccccaacacggggaaggtgcacaccctgctcacggtggagatctttggg
gtcatccgctccctgatggcattcaggctgactggtggcaccaaagactacgtcgtggtg
gggaccgattcgggcaggatcgtcattctggagtaccagccatctaagaatgccttcgat
aaggtgcaccaggagacctttggcaagagtggttgccgacgcattgtgccaggccaattc
cttgccgtcgaccccaagggcagggccgtcatgattggcgcgattgagaaacagaagctg
gtgtatatcctgaatcgtgatgctgctgccaggctgaccatctcgtctcctctggaggct
cacaaggccaacacactggtgtaccacgtcgtgggcgttgatgtgggctttgagaaccct
atgtttgcctgtctggagatggattatgaagaggcggatgtcgatccctctggagaggcc
gctgccaacacccagcagactctaaccttctacgagctggatctgggtctgaaccatgtg
gtgcggaagtacagtgagcccttggaggagcatgggaatttcttaatccctgttcctggt
ggtgcggatggacccagtggtgtattgatctgctcagaaaactacatcacttacaaaaat
tttggagaccagcctgacatcagatgtcccattccgaggagacggaatgacctggatgat
ccagagcgtggaatgatctttgtctgcgctgccactcacaagacaaagtccatgtttttt
ttcttggtccaaactgagcagggtgacatctttaaagttacgttggagactgatgaggac
atggtgactgagatcaggatgaagtattttgacacggtgcctgtggcaactgccatgtgt
gttcttaaaaccggttttctctttgtggcctccgagtttggaaatcattacctgtatcag
attgcccacctgggagatgatgacgaagagccagagttctcttcggccatgccattggaa
gaaggcgacacttttttcttccaagtacggctcctcaagaacctggtgttagtggatgag
ctggacagcctctctccaatcatggcctgccagatcgcggatttggcgaacgaggataca
cctcagatgtatgttgcctgtgggcgcggaccacgttcttccttgcgtgtgcttaggcat
gggcttgaggtgtctgagatggctgtgtccgaacttcctggtaacccaaatgctgtgtgg
accgtcaggaagcacattgaggaggaatatgacgcgtacatcatcgtgtcattcgtaaac
gccacgctggtgctgtccatcggagagactgtggaggaagtcacagactccggtttcctg
ggcaccacacccacgttatcgtgctcgctgcttggcgaagatgccctcgtacaggtgtac
ccagatggcattcgtcacattcgtgcagacaagcgagtaaatgagtggaaaacgccaggg
aagaaggcgattgtgaagtgtgcagtgaaccagcggcaagtggtgattgctctcagtggt
ggagagcttgtctactttgaaatggacccgtctggacagctgaatgagtacacggagcgg
aaggagatgtctgcggacgtcgtctgcatgagcctggcaaatgtaccatccggggagcag
cgctcgcgcttcttggctgttggtctggtggacaacaccgtgcgcatcatctctctggac
ccttcggactgcctgcagccgctgagtatgcaggctctcccagcccagcctgaggcactt
tgcattgtggagatgggtggtgctgagaagcaagacgagtctggagagaagggttctctt
ggaggactctacctcaacattggcctacagaatggtgtcctgttgcggacagttttggac
acagtgacaggggacttgtccgacaccaggacgcgatatctgggctcccgacccgttaag
ctcttccgtgtcctcatgcagggacaagaggccgtgttggccatgtccagccgatcctgg
ctcagctactcgtaccaatcgcgcttccatctcaccccgttgtcctatgagacgctggag
tatgcctcttgttttgcatccgagcagtgccctgagggcattgtggctatttctacaaac
accctgaggattttggctttggagaagctcggtgcggtgtttaaccaggtgtcaacgcca
ctgcagtacacgccacgcaagttcgtcatccatcctgacagcaacaacctcatcatcatc
gagacggaccacaatgcttacacagaggccaccaaggctcagcgcaaacaacaaatggca
gaggaaatggtggaggcagcaggtgaggaagagcgggagctggcggcagagatggctgct
gccttcctcaacgagaacctacctgagaccacgtttggcgcgcccaaggcaggcagcggt
cagtgggcctctgtggtgagggccctcaaccccatccagggcaacacgttagagcttgtc
caactggaacaaaatgaggctgccttcagcgtggccgtgctgaaattttcaaatggcgga
gacgattggtacgtgctggtgggtgtggccaaggatttgatcctcgcgccacgttctgtt
gctggtggattcatctacacgtacaagcttgtggaggacggagagaaatttcaatttgtt
cataagacgccagttgaagatgtaccagcggccattgcaccctttcaaggcagagtactc
atcggggtagggaaactgcttcgcctgtacgacctgggaaagaagaaactgctcaggaag
tgtgagaacaagcacgtcgccaacttcatcgtgggcatccacacggttgggcagcgtgta
attgtgtcggatatccaagagagcttcttttgggtacgctacaagcggaatgagaaccag
ctcatcatctttgccgacgacacgatgcctcggtggatcaccactgcctggcagctcgac
tacgacaccatggctgccgcagacaagtttggcaacatcgctgtggtacgacttcctcca
aatatcaatgatgacgtggacgaggatcccacgggaaacaaggcgttgtgggacagagga
attctcaatggcgcctcgcaaaaggctgaaatcataatgaactaccatgtgggagagaca
tgcctctcgctgcagaaagctacactcattccaggcggttctgagtccctggtatacact
actctgtcgggtggggtgggcatcctggtgcccttcacctcgcacgaggaccatgatttt
ttccaacatctggaaatgcacatgagggcagaacacccgcctctctgtggccgtgaccac
cttagctaccgctcctactacttccctgtcaagaatgtgatcgacggggacctatgtgaa
cagtttaactcgatggaccctgcaaagcagcgcagtgtggctgaggaactggaccggaca
ccagctgaagtctccaagaagctggaggacatacgcactcgatatgccttttag
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