Petromyzon marinus (sea lamprey): 116946253
Help
Entry
116946253 CDS
T09614
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04010
MAPK signaling pathway
pmrn04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116946253
04020 Calcium signaling pathway
116946253
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmrn04040
]
116946253
Ion channels [BR:
pmrn04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116946253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Radial_spoke_3
Motif
Other DBs
NCBI-GeneID:
116946253
NCBI-ProteinID:
XP_032817160
UniProt:
A0AAJ7X0U2
LinkDB
All DBs
Position
26:complement(10018205..10338419)
Genome browser
AA seq
2734 aa
AA seq
DB search
MAERLPEAGAPRDHGSRLCGRGSRPTTTTTTATATTTTSSTATTSAVGKTSSSVNAAGSS
SSSVVGSSTVIYMPRCVHHPEVTSDAGESFPAAGPLPGAGALPGAERRHDRAAGGGGGGG
GGDGGGGGTGDVGEEGTEDPELPYPALAPVAFFVMKQSTMPRSWCLRMVCNPWFERASML
VILLNCATLGMFQPCAEVECHSQRCQVLQAFDDFIFAFFAAEMLVKMVALGVFGKKCYMG
DAWNRLDFFIVASGMLEYSLAMESVSLSSIRTVRVLRPLRAINRVPSMRILVTLLLDTLP
MLGNVLLLCFFVFFVFGIVGVQLWAGLLRNRCFQAENVTLELNNSRMSPYYPSDNDDENP
FICSLPRDNGMQTCDTVPPSVLPGGPRCRWPPPLSLRTSSLPQSSSSLLSSSSSSLSYDA
NSSGLSFATLGEAVAAGHGYPYSQGGNVSGNCINWNRLYTVCRAGLRNPHSGAINFDNIG
YAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIIGSFFMINLCLVVIATQFSET
KQRENQLMEEQRARMHGSDSSLASFREPGSCYEELVRYLGHLLRKVWRRSSRAFVDAHVA
LQRRINPAAAAAAAAAAAATAAAAAGGRPRRDQNGSKQGTRPRRRRKGKKGSRKRRKSWR
SVHHHHLVHHHHHHHHHYHVNGGGGGGGGHRPALARCMCRPRGGSGGGSSGGGPNERDVL
PADVRTAVVVVSSPPAPPLPPPPLSSPSGNFGVRRTPGLASVHSVYHADCHLLAGRPLPF
RGSPLTSEVTVAAAAAAAASAVVASAVSQRPPPPRPPHEMNYPTIVPSAVVAPDKGNKTW
KTRGPRRGESRAHSSSTTDAFAKRHHIFAAYAGTSELLCRCPAFPSVPLGVPQPDLLPAA
AGEGCALCAAGQDEPSACRRGGGGGGGGGCGGGDSVSEGSASGRESPSSARDGFGPGEAV
CSVCRCGRHCRDRRAGSGSGSDSGSGSGSGSDCGGGDDDGDGDGDGDGDGDDDDSGGDER
GGGGDGGDSGGGDDGERDGTGKRGWLRRWKERPCVAGLTRFCHTVSQRFSWIVNSKYFNR
GIMVAILINTVSMAIEYHEQPEELTNILEISNIVFTSMFALEMLLKIFACGLFGYIRNQY
NIFDGVIVIISVWEIVGQSGGGLSVLRTFRLLRVLKLVRFMPALRRQLLVLMRTMDNVAT
FCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTIPDRKNFDSLLWAIVTVFQILTQEDWN
VVLYHGMASSSPWAALYFIALMTFGNYVLFNLLVAILVEGFQAEGDANKSESDGEQCSPY
NLDDGHDKLKELHSIAVLTPNGLLEGKCMSMPPLITHTAPTPWGSPRSPSPDSRRGSSSS
LGPCPGVPSPPSGRSSPWGGRGSVCSSRRSSWASVGLDGLLPRPGGHTLLPVRHDDKASL
SSAVRRDSLAQWSLRSISPRGSVCSAGTEDGLSPRGLLIARRAASCDLPELLQTPAMRCN
GSPLSPLSPLSRSPSLPRSARLAQRHHQHHHHQQQQHQHQQQQFVSHGSSPLPGRETPRL
SRKFSDEAEEIYDSHCFRLRRRLEPYKPKFCESRKEWSLYLFAPHNKVRMQCRKIIAHKV
FDHVVLLFIFLNCITIALERPDIGADSPERLFMTISNYIFTAVFVTEMSIKVIAMALVFG
DGAYLRSTWNTLDGFLVLVSLVDIIVSLASDSGARILGILRVLRLLRTLRPLRVISRAPG
LKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGLDTKNITNKSDCLR
ANYKWLKHKYNFDNLGQALMSLFVLSSKDGWVNIMYTGLDAVGLDQQPVINYNPWMLLYF
ISFLLLVSFFVLNMFVGVVVENFHKCRQHQEAEEARLREEKRLKRAEKKRRKAQKKPYYS
EYSPVRLFIHSVCTSSYLDIFITAFIGLNVLTMAMEHYNQPKSLNEGLKYCNYVFTSVFV
LEALLKLLAFGIRRYFKDRWNQLDLAIVLLSIMGIILEEIEISASLPINPTIIRIMRVLR
ITRVLKLVKMATGMQALLAVVVQALPQVGNLGLLFLLLFFIYAALGVELFGGLTCEDYPC
EGLSRHATFENFGMALLTLFRVSTGDNWNGIMKDTLRECSSLDRQCISYLPVISPIYFVT
FVLTAQFVLVNVVVAVLMKHLEDSAEDAHEEEEEENAARIAAGIIGASGLPSATARLLGI
AVPTANPGGNPALASVSSPSFSPSHFRCVASSSSAAAAAALAGSRGSNPRRSGLELRAAR
PPGRLSSELTFRRPSVESVDEGPRLETLGEQTLLLPAVRHVEVSRALSLPSDVLTSTPDS
QQQQQQQGASESSRMPEVEPNRAAQKSGSTAGCGMAVAEGTLSSSASGRSGGPVTQEVEW
CPQQPTACEWHRCRVRRRRGSECLAVSTGMQRLLAQEATAADRSPRHVELPGRRRSRGVS
PADGSPRASPDGALHRPPAPELIPDAHADGMTAAAGRLHAGGGGGLHERARVVRMQRRHS
VDVYPRDGPTGCSSRRPPPSPPRASNGGGCGGGGSKVCVGIGWRKAPTSPSPPSPPLITV
VAPGDATETAARGAPEARRRCISYESLARRTGTPPVSHQLHQQQLHHHHQQQQQQNERCP
DGHGRERGRALPPSLLAVPGDGGAPRGPRCAGRGSVGSLSELLLLKAAAAEDPLVRPRTA
SLGVKSGTCGGAASGSRRSLVADDGENGSGCDGV
NT seq
8205 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgattacccgaagctggcgcgcccagggaccacggcagccgcctgtgcggc
cgtggatcccgtcccaccaccactaccaccaccgccactgccacaaccacaaccagctct
acggccaccaccagcgccgtcggcaagacgagcagcagcgtgaacgctgccggcagcagc
agcagcagcgtcgtgggcagcagcaccgtgatctacatgccgcgttgtgtccaccacccg
gaggtgacctcggacgccggcgaaagtttccccgccgctgggccgctgcccggggcagga
gcgttgcccggggcggagaggcggcacgaccgggcggccggtggtggtggcggcggtggt
ggcggtgatggcggtggtggtggaacgggagatgttggggaagaaggaacggaagacccg
gagctaccttaccccgcgctcgcgcccgtcgccttcttcgtcatgaagcagagcacgatg
cccaggagctggtgtctcaggatggtttgtaatccgtggtttgagcgggcgagcatgctc
gtcatcctgctcaactgtgccaccctgggcatgttccagccctgcgccgaggtggagtgc
cactcgcagcgctgtcaggtgctgcaggcctttgatgatttcatcttcgcgttctttgcc
gcggagatgctggtgaagatggtcgccctgggcgtgttcgggaagaagtgctacatgggc
gacgcgtggaaccgcctcgacttcttcatcgtggcctctggcatgctggagtactctctt
gccatggagagcgtcagtctctcctccatccgcaccgtccgggtactccggccactgcgg
gcaatcaaccgggtccccagcatgcgaatcctggtgacgctgctgctggacacgctgccc
atgctggggaacgtgcttcttctctgcttcttcgtgttcttcgtgttcgggatcgtggga
gtgcagctgtgggctggacttctacgcaatcgatgcttccaggctgagaacgtgacactc
gagctcaacaacagccgcatgtcgccgtactacccgtcggacaacgacgacgagaacccc
ttcatctgctcgctgccccgagacaacggcatgcagacgtgcgacaccgtgccgccctcg
gtgctgccaggcgggccccgctgccgctggccaccgccgttatcgctgcgaacgtcgtcg
ctgccgcagtcctcttcgtccttgctgtcgtcatcgtcgtcgtctttgtcttacgatgcc
aacagctctgggctctccttcgccacgctaggggaggccgtggcggctggccacggctac
ccttacagccagggtggcaacgtgagcggcaattgcatcaactggaaccggctgtacacg
gtgtgccgggcggggctacgcaacccgcacagcggtgccatcaacttcgacaacatcggc
tacgcgtggatcgccatcttccaggtcatcacgctggagggatgggtggacatcatgtat
tacgtgatggacgcccactccttctacaactttatctacttcattctgctcattatcatc
ggctccttcttcatgatcaacctgtgcctcgtggtcatcgcgacgcagttctccgagacg
aagcagcgcgagaaccagctgatggaggagcagcgcgcacgcatgcacggcagcgacagc
tccctcgccagcttccgcgagccgggcagctgctacgaggagctcgtgcgctacctggga
cacctgctgcgcaaggtgtggcgccgctcctcgcgagccttcgtcgacgctcacgtggcc
ctgcagcggcgcatcaaccccgccgccgccgccgccgcagccgccgcggccgcggcgacg
gcggcggcggccgccggcgggcgtccgcggcgcgaccagaacggcagcaagcagggcacg
cgcccgagacgccgccgcaaggggaagaagggcagccgcaagaggcgcaagtcctggagg
tcggtgcaccaccaccacctcgtgcaccatcaccaccaccatcaccaccactaccacgtc
aacgggggaggcggcggcggcggcgggcaccggccggcgctcgcgcggtgcatgtgccgt
ccccgtggcggtagcggcggtggcagcagtggcggcggtccgaacgagcgcgacgtgttg
ccggcggacgttcggacggccgtcgtggtggtgtcgtcgccgccggcgccgccgctgcca
ccgccgccgctttcgtcgccgtccggtaactttggtgtgcgacgcacgccgggcttggcg
tccgtgcacagcgtctaccacgccgactgccacctgctggcgggacgcccgctgccattc
cggggttcgccgctcacctcggaggtcacggtggcagcggcggcagcggcggcggcctcc
gccgtcgtcgcgtcggccgtgtcccaacggcccccgccgcctcggccaccgcacgagatg
aactacccgaccatcgtgccgtcagcggtggtggcgccggacaaagggaacaagacgtgg
aagacgcgagggccccgccggggagagtcgcgggcgcacagctcgagcaccacggatgcc
ttcgccaagcggcaccacatcttcgccgcttacgcgggcacgagcgagctgctgtgccgc
tgcccggcgttcccgagcgtccccctgggcgtcccgcagcccgacctgctgccggccgcg
gcaggcgaagggtgcgccctgtgcgccgcgggacaggacgagccgtcggcgtgcaggcga
ggaggaggaggaggaggcggcggcggctgcggcggcggtgactcggtctcggagggctcc
gcgtccgggcgcgagtccccctccagcgcccgcgacggcttcgggcccggggaggccgtc
tgctccgtctgccgctgcgggcggcactgccgcgaccgccgggccggctccggctccggc
tccgactcgggctccggctcgggctccggcagcgattgcggcggcggcgacgacgacgga
gacggcgacggagacggagacggcgacggcgacgacgacgacagcggaggagatgaacgc
ggcggcggcggcgacggcggcgacagcggcgggggggacgacggggaacgcgacgggacg
gggaagcgcgggtggctgcggcgctggaaggagcggccgtgcgtcgccgggctgacgcgc
ttctgccacaccgtgagccagcgcttcagctggatcgtcaacagcaagtacttcaaccgc
ggcatcatggtggccatcctcatcaacaccgtcagcatggccatcgagtaccacgagcag
ccggaagagctgaccaacatcttagagatcagcaacatcgtgttcacgagcatgtttgcg
ctcgagatgcttctgaagatcttcgcgtgcggcctctttggctacatccgcaaccagtac
aacatcttcgacggcgtcatcgtcatcatcagcgtgtgggagatcgtggggcagtcgggc
ggagggctctcggtgctgcgaacgttccgcctgctgcgcgtgctcaagctggtgcgcttc
atgcccgcgctgcgccgccagctcctggtgctcatgagaaccatggacaacgtggccacc
ttctgcatgttgctcatgctcttcatctttatcttcagcatcctggggatgcatctcttt
ggatgcaagttcagcctgaagaccgacacgggagacacaatccccgatcggaagaacttc
gactcactcctctgggcaatcgtcaccgtgttccagatcctgacacaggaggactggaac
gtggtcctgtaccacggcatggcctcctcgtctccctgggcggcgctctacttcatcgcg
ctcatgacctttggaaactacgtcctcttcaacctcctggtggccatcctggtggaggga
ttccaggcggagggcgatgcaaacaagtctgagtctgatggggagcagtgctccccctat
aacctggatgacggacacgacaagctcaaagaactccactccattgccgtgctgacaccc
aatgggctcctggaaggaaagtgcatgtcaatgccaccgctcatcacccacacggccccc
acgccatgggggtctcctcgctccccgtctcccgactcacggagagggagcagctcctcc
ctgggaccctgccccggggtcccctccccgcccagcgggcgcagctccccttggggcggc
cgtgggagcgtgtgcagcagccgtcgctccagctgggccagcgtgggcctcgacggcctc
ctgccccggcccggcgggcacacgctgctgcccgtgcgccacgacgacaaggcgtcgctc
tcgtcggccgtgcggagggacagcctcgcgcagtggagcctgaggagcatcagcccacgg
ggcagcgtgtgctcggcgggcacggaggacggcctctccccccggggcctcctcatcgcc
cgccgcgccgcctcctgtgacctccccgagctgctccagacgcccgccatgcgctgcaat
ggctcgccgctctccccgctgtcgccgctctcccgctcgccctccctgccgaggagcgct
cgcttggctcagcgacaccaccaacaccaccaccaccagcagcagcagcatcagcatcag
cagcagcaattcgtgtcgcacgggagcagtccgctgcccggcagggagacgccgaggttg
tcacgcaagttcagcgacgaagccgaagagatttacgatagccactgcttcaggctccgt
cggcgactggaaccttacaagcccaagttttgcgaatcccgaaaagaatggtcgctctac
ctgtttgctccacataacaaggtcagaatgcagtgtcgcaagatcatcgcacacaaggtg
tttgaccatgtggtgcttctcttcatcttcctcaactgcatcaccatcgcccttgagagg
ccagacattggagcggacagccctgaacggctgttcatgaccatttccaactacatcttc
acggccgtttttgtgactgagatgagcatcaaggtgatcgcaatggcgctggtgttcggg
gacggcgcgtacctacgtagcacgtggaacacactcgacgggttcctggtcctggtctcg
ctggtcgacatcatcgtgtcgctcgcgtccgacagtggagcgcgcatcctgggcatcctg
cgcgtgctgcgtctgctgcgcacgcttcggccgctccgggtcatcagccgcgcgccggga
ctgaagctggtggtggagacgctgatcacgtccctgaagcccatcggcaacatcgtcctc
atctgctgcgcgttcttcatcatcttcggcatcctgggcgttcagctgttcaaggggaag
ttttactactgcgagggcctggacaccaagaacatcaccaacaagtccgactgcctgagg
gccaactacaagtggctgaaacacaagtacaacttcgacaacctcgggcaggccctgatg
tcgctgttcgttttgtcctccaaggacggctgggtgaacatcatgtacaccggcctcgat
gccgtggggctcgatcagcagcccgtcatcaactacaacccgtggatgctgctctacttc
atctcgttcctgctgctcgtcagcttcttcgtgctcaacatgttcgtgggcgtcgtggtg
gagaacttccacaagtgccggcagcaccaggaggccgaggaagcgcgacttcgcgaggag
aagaggctcaagagggccgagaagaagcgacgcaaggcgcagaagaagccctactactcc
gagtactcgcccgtgcgcctcttcatccactcggtgtgcacgtcaagctacctggacatc
ttcatcaccgccttcatcggcctcaacgtgctcaccatggcgatggagcactacaaccag
cccaagtctctgaacgagggcctcaagtactgcaactacgtcttcacctccgtcttcgtg
ctggaggccttgctcaagctgctggcgttcgggattcgacgctacttcaaggacaggtgg
aatcagctcgatttggccattgtcctcctgtccatcatgggcattatcctggaggagatt
gagatcagtgcctccctccccatcaacccgaccatcatccgcatcatgagggtcctgcgc
ataacacgcgtgctgaagctggttaagatggcaacggggatgcaggcgctgctggcagtg
gtggtgcaagcgctcccccaggtggggaacttgggtcttctctttctcctcctcttcttc
atctacgcggctctgggggtggagctcttcggaggactcacttgcgaggactacccgtgc
gagggcctcagccgtcacgccacgttcgagaacttcggcatggcgctgctgacgctgttc
cgcgtgtccacgggcgacaactggaacggcatcatgaaggacacgctgcgcgagtgcagc
agcctcgaccggcagtgcatctcttacctgcccgtcatctcgcccatctacttcgtgacg
ttcgtgctcacggcgcagttcgtgctcgtcaacgtcgtggtggccgtgctcatgaagcac
ctggaggacagcgccgaggacgcgcacgaggaagaggaggaggagaacgcggcgcgcatc
gcggccgggatcatcggcgcctccggcctgcccagtgccaccgcccgcctcctgggcatc
gcggtgccgaccgcgaaccccggcggcaacccggcgctcgcgtccgtctcgtcgccgtcg
ttctccccgtcgcacttccgctgcgtcgcgtcctcgtcctccgccgcggcggcggcggcg
ttggccgggagcaggggatcgaaccctcgccgctcagggttggagctccgcgccgctcgg
ccccccggccggttgagcagcgagctcacgttccggaggcccagcgtggagagcgtggac
gaaggcccccggctcgagaccctgggggagcagacactgctgctgcccgcggtgcggcat
gtcgaggtcagccgagccctctcgctgcccagcgatgtcctcacgagcacgcccgactct
cagcagcagcagcagcagcagggagcctctgagagtagcagaatgccggaggtggaacca
aatcgggcggctcagaaatcaggttccacggcaggctgtggcatggcggtggcagagggg
acactgtcaagctcggccagtggccgcagtgggggacctgtgacgcaggaggttgagtgg
tgccctcagcagcccaccgcgtgcgagtggcaccggtgtcgagtgcggcggcgccgaggg
tcagagtgcctggcagtgtcaactgggatgcaacgcctccttgcgcaggaggcgacggct
gccgaccggtccccgaggcacgtggagcttccggggcgccgacgcagccgcggcgtctct
cccgcagatgggtcgccgcgagcctcgcccgacggcgccctccaccggcctccggcaccc
gagctgattcccgacgctcacgcggacgggatgacggcggcggccggtcggcttcacgcc
gggggcggcggcggcctccacgagcgggcccgggtcgtccgcatgcaacgacgccactcg
gtggacgtttacccacgcgacgggccgacgggctgctcgtcccgccgtccgccgccctcg
ccgccgcgggcgtccaacggtggcggctgcggcggcggcggctcgaaggtctgcgtcgga
atcgggtggcggaaagcgccgacgtcgccgtcgccgccgtcgccgccgctcataaccgtc
gtggcgccgggggacgccacggagaccgcggcgcgaggagccccggaggctcggcgacgc
tgcatttcgtacgagtcgctggcgaggaggacggggacgccgcctgttagtcatcagctc
catcagcagcagctccatcatcatcatcagcagcagcagcagcagaatgagcgttgtccc
gacggccatgggcgcgagcgcggacgcgcgctgccgccgtcgttgttggctgtgcccggc
gacggcggcgcaccgcgagggccgcgctgtgcgggacgcggctccgtcgggagcctctcc
gagttgctgctgctgaaagcggcggcggcggaggatccgctggtgaggccgaggacggct
tcgctgggtgtcaagagcggcacgtgcggtggggcagcctcggggtccaggagaagcttg
gtggcggacgatggggagaatggcagcggctgcgacggagtctag
DBGET
integrated database retrieval system
