Petromyzon marinus (sea lamprey): 116946833
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Entry
116946833 CDS
T09614
Symbol
UBE4B
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04120
Ubiquitin mediated proteolysis
pmrn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116946833 (UBE4B)
04120 Ubiquitin mediated proteolysis
116946833 (UBE4B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmrn04121
]
116946833 (UBE4B)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116946833 (UBE4B)
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
U-box type E3
116946833 (UBE4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF3323
Motif
Other DBs
NCBI-GeneID:
116946833
NCBI-ProteinID:
XP_032817894
UniProt:
A0AAJ7X1C5
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All DBs
Position
28:112731..147372
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AA seq
1311 aa
AA seq
DB search
MEELSPDEIRRRRLARLAQPATPLTSPQHETAPPIAGPSTPVASSPPATAQGPSIAQGPS
TSPSVPVEMSQSSSLSSSPSAGAESQSQGLSRSQSMEIDRSAPDKSGSQVDVDSGIENME
VEESDRKDKRGLNVKGLMQASDDTEMTKDQLLQLVCKILRVSWKQPGRDLIPLPALAAEF
LTAPRGMFSDWKDLVGQILVEVLVNLTRSDAQAPADLPDSVDSVEENPFAGLTAGPLAAS
QPVPVPPGRRDVSGGDPVALCSFPRSPGACGGEGASSSLGGSQGTSLYSASPSPWFRGLG
ASALPSRPSPRPSPPSPFPATIGAASPTPGQFVLNTSAVHSPMFIGTPQRAALAASPRLD
DPVALLLSLVAAHGPRRHRSGHGGDDDDYDDNDDEDEEGVLGTSSNSSAAISSDAMALCL
PAEHRRDVFSMESCAETHALNYLVECFDRVAMEERAAPKMCSLPEVGRVLGQIRTQCVAH
ATLVLQGALTQPRSALQPSLLVPYLLCRNLPVGFIQEMVRASCLDQDAFSQVFMPVVQDL
AQACCECSLENDNFKYPLMALAELCEVKVGNTRPICSLVALHELWLPDSLSGGGGRELQR
LSFIGSVFSLSAFSEDDPKVAEKYFSGPTLTLDNTRVVSQALQHHLETARMEQFKVLHSM
LLNGGTREATLAYMAAVVNRNGKKSQLQTDDRLVSSDGFMLNFLWVLQHLAARIKLETVD
PLYPFHPRCRLTLGPDETRLKATREELAVWLDRLRSEPCCQADVKFPTECFFLTLHCHHL
SILPACRRYTRRLREIRDLNRSLEELKSKEEETPSTGRHRELLKRFKARLRRLVRAKACA
DVVLLDENLLRRCLHFYGSVVCLLFRIVDPVNPKPVLPLNPEIPEAFSALPEFYIEDIAE
FLLFIIQYSPQVLQSEPCGPDLATFLLVFVCSHTYLRNPYLLAKLVEVLFVLNPSVQPRT
TRFHEMLENHQLGTRHLAPSLMKFYTDVEQTGASSEFYDKFTIRYHISAIFKSLWSNPAH
QATFLEEFNSGSQFVRFINMLINDTTFLLDESLDSLKRIHELQEEMRNKEAWDRLSQEQQ
QSRASQMSQDERQCRSYLTLAMETLDMFHYLTKQVQKPFMRPELSDRLAAMLNFNLQQLC
GPKCRDLKVESPEKYGFEPRRLLDQLTDIYLHLDSPEFAHAIANDERSYRKELFEDAVGK
MKKAGIKTTIAVERFRLLAERVDEMVQHNVQADHDYSDAPEEFRDPLMDTLMRDPVRLPS
GKVMDRSIIIRHLLNAHTDPFNRQPLDETMLVPETELKERIQAWMREKHRK
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctcagcccagacgagatccgcaggcgccgcctcgctcgtttggcgcagccg
gccacgccgctcacgtcaccgcagcacgagacggcaccgcctatcgcggggccctcaact
cccgtagcctcatcacccccggccacggcccaggggccatccatagcccaggggccgtct
acctcgccgagcgtgcccgtggagatgagccagagcagctctctgagcagctccccatca
gccggcgccgagtcgcagtcgcaaggcctatcgcgctcacagagcatggagatcgaccgc
tctgcgcccgacaagagtggatctcaggtggatgtggactcggggatagagaacatggaa
gtggaggagagcgaccgcaaggataagcgaggcctgaacgtaaagggcttgatgcaggcc
tcggacgacacggagatgaccaaggaccagctgctacagctggtttgcaagatcctgcgg
gtgtcatggaagcagcccggccgggacctcatccccctcccagcgctcgcggctgagttc
ctgaccgccccacggggcatgttttccgactggaaggacctggtgggacagatcctcgtg
gaggtgctcgtgaacctgacacgctcggatgcgcaggctcctgcggatctcccggactcg
gtggactccgtggaagaaaatccgttcgccggtcttaccgctggacccctcgcagcatcg
cagcctgtgcctgtgccccccgggcggcgagatgtttctggtggcgaccccgtggcgctg
tgcagctttcccagaagccccggtgcatgcggtggagagggtgccagctcaagtctgggt
ggcagtcagggcacaagtctgtacagtgccagtcccagcccctggttccggggtctcgga
gcgtcagccctcccatcccgcccctctcccagaccctccccgccgtccccctttcctgcc
accatcggcgctgcttctccgaccccagggcagttcgtgctcaatacttctgccgtacac
agtcccatgttcattggaaccccgcagcgcgcggcgttggcagcgtcgccacgccttgac
gacccggtcgccctcctcctgtctctcgtggcggctcacggaccgcgccgccaccgctcg
ggccacggcggtgatgatgacgactacgatgataacgatgatgaggatgaggagggtgtg
ctcggcaccagcagcaacagcagcgccgcaatcagcagtgacgcaatggcgctctgcttg
ccagcggagcaccgcagagacgtgttctcgatggagagctgcgcagagacgcacgcgctc
aactacctcgtcgagtgcttcgaccgcgttgccatggaggagagggcagcacccaagatg
tgcagccttcccgaggtcggccgcgtgctggggcagatccgtacgcagtgtgtggctcac
gcaacgctcgtgctgcaaggggcgctaacccaaccgcgatccgcactacagccgtcgctg
ctggtgccatacctgctgtgccgaaatttgccggtcggcttcattcaggagatggtgagg
gcctcctgcctggaccaggatgcgtttagtcaggtgttcatgccagtggtgcaagacctc
gcccaggcctgctgtgagtgctcgctggagaatgacaatttcaagtacccgctcatggca
ctggcggagctgtgcgaggtgaaggtgggaaacactcgccccatctgctccttggttgca
ttgcacgagctgtggctacccgactcgctctctggtgggggcggccgcgagctgcagcgt
ctctccttcatcggctccgtcttctcactctccgccttctccgaggacgaccccaaggtg
gcagagaagtatttctcggggccaacactcacactggacaatacgcgcgtcgtcagccag
gccctgcagcatcacttggagacggcgcggatggagcagttcaaggtgctgcacagcatg
ctgctcaatggaggcacgcgggaagccacgctcgcgtacatggctgccgttgtcaaccgc
aacggcaagaagtcacagctgcagacggatgaccgcctggtgtcgtccgatggcttcatg
ctcaacttcctgtgggtgctgcagcacctggcggcgcggatcaagctggagactgtagac
ccgctctacccattccacccgcgctgccggctgacactgggccctgacgagacgcggctg
aaggcgacgcgcgaggaactcgctgtctggctggaccgactgcgctcggagccgtgttgc
caggccgacgtcaagttccccacagagtgcttcttcctcacgctgcactgccaccacctc
tccatcctccctgcatgccgacgctacacacggcgcctgcgcgagatccgcgacctgaat
cggagcctggaggagctcaaaagcaaagaggaggagacaccaagcaccgggcgccaccgc
gagctgctcaaacgcttcaaggcgcggctcaggaggctagttcgtgcgaaggcatgtgcg
gacgtggtcctgttggacgagaatctgctgcggcgttgcctgcacttctatggctccgtg
gtctgtctgctcttccgcatcgtcgaccccgtcaaccctaagcccgtgctgccgctgaac
cccgagatcccagaggcattctcagctttgccagagttctacatcgaagacatcgccgag
ttcctgctcttcattatccagtacagcccgcaggtgctgcagagcgagccgtgcgggccc
gacctcgccacctttctgctggtgttcgtgtgcagccacacatacctgcgcaacccgtac
ctactcgccaaactggtggaggtgctgttcgtgctgaaccccagtgtgcagccacgcacc
acgcgcttccacgagatgctggagaaccaccaactgggtacgcgccacctggcgccatcg
ctcatgaagttctacacagacgtggagcaaacaggcgccagcagcgagttctatgacaag
tttaccatccgctaccacatcagcgccatcttcaagagcctgtggagcaatccggcacac
caggccaccttcctggaggagttcaactcggggagtcagtttgtgcgcttcatcaacatg
ctgatcaacgacacaacgttccttctggacgagagcctggactctctcaagaggatccac
gagttgcaggaggagatgcgcaacaaggaggcgtgggatcgcctctcccaggagcagcag
cagagccgggcgtctcagatgagccaggacgagaggcagtgtcgctcctacctcacgctt
gccatggagaccctcgacatgttccactacctcaccaagcaagtccagaagcccttcatg
cggccagagctgtctgatcgcttggcggccatgctgaacttcaacctgcagcagctgtgc
gggcccaagtgccgggacctgaaggtggagagccctgagaaatacggcttcgagccacgc
cgcctgctcgaccagctcaccgacatctacctgcacctcgactcgcccgagtttgcgcat
gccattgccaatgacgagcgctcgtaccgaaaggagctgtttgaggatgccgtgggtaag
atgaagaaggccggcatcaagacgaccatcgccgtggagcgcttccgcctactggcggag
cgtgtggacgagatggtgcagcacaacgtgcaggccgaccacgactacagcgatgcaccc
gaggagttccgcgacccgctcatggacacgctgatgagggaccctgtgcgcttgccgagc
ggcaaggtgatggaccgcagcatcatcatccggcacctgctcaacgcgcacaccgacccc
ttcaaccggcagccactcgacgagaccatgctggtgccagaaacggagttgaaggagagg
atccaagcgtggatgcgagagaagcacaggaagtga
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