Petromyzon marinus (sea lamprey): 116946834
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Entry
116946834 CDS
T09614
Symbol
COPB2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116946834 (COPB2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmrn04147
]
116946834 (COPB2)
Membrane trafficking [BR:
pmrn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
116946834 (COPB2)
Exosome [BR:
pmrn04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
116946834 (COPB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
BBS2_Mid
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Septum_form
HEAT_GCN1
WD40_2
Motif
Other DBs
NCBI-GeneID:
116946834
NCBI-ProteinID:
XP_032817899
UniProt:
A0AAJ7THE0
LinkDB
All DBs
Position
28:156325..181200
Genome browser
AA seq
972 aa
AA seq
DB search
MPLRLEIKRKLTARSDRVKCVDLHPSEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWMVAGSDDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPSQPFLLTSSDD
MLIKLWDWEKKWTCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSTPNFT
LEGHEKGVNCVDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERAWCVSGLRGSNTIALGYDEGSIIVKLG
REEPAMSMDSSGKIIWAKHSEVQQANLKAMGEAEIKDGERLPLAVKDMGSCEIYPQTISH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRENSSTVKLFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSMSGLAFFDWESTELVRRIEIQPKNIFWSDSGELVALA
TEDSFFILRYHSEKVVAAQETHQGVTEDGVEDAFEVLGEIQEVVKTGLWVGDCFIYTNSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNMVSYSLLLSVLEYQTAVMR
RDFDMADKVLPTIPKEQRTRVAHFLEKQGFKSQALAVSCDPEHRFELALQLGELKIAYQL
ATEAESEQKWKQLAELATSRCQFQLAQECLHRAQDYGGLLLLATASSDQAMVTRLAQGAE
RDGKNNVAFLSYFLQGNLDKCLEVLINTNRLPEAAFLARTYLPSEVSRVVKLWRESLAKS
NQKAADSLADPTEYENLFPGLREAAAGELYLRTTSSTRLACQYPLVTPNEERNVLEEAKG
YTPKETTAAKQLVVGVIQEKPSIVQEEEKVEEVEEEVEDDVAAEEQGENDNDPDDDADVV
EDTDKKNLELVTANSDDCTPGAGAEAADIHKSEPVVLSKEEKTLQELEEDLDNLEIDENI
DTSDINLDEDFE
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgcgactggagataaagcgcaagctaacagcacgctcagaccgcgtgaagtgt
gtggacctacatccgagcgagccatggatgctggccagcctctacaatggcagtgtgtgc
gtgtggaaccatgagacacagacgctggtgaagacgtttgaggtgtgcgacctgccagtg
cgcgctgccaagtttgtggctcgcaaaaactggatggttgctggctcggatgacatgcag
atccgtgtattcaactacaatacgctggagcgtgtgcacatgttcgaggctcactcggat
tatatacgctgcatcgccgtgcacccgagccagcccttcctactcaccagcagtgatgac
atgctcatcaagctgtgggactgggagaagaagtggacgtgctcacaggtgtttgaaggc
cacactcactacgtcatgcaaattgtcatcaaccctaaggacaacaaccagtttgccagc
gcttcactcgaccgcaccatcaaggtgtggcagttgggttcgtccaccccgaacttcacc
ctagagggacatgagaaaggggtcaactgcgtcgactactacagcggtggcgataaacct
tacctcatctcgggtgccgatgaccgccttgttaaaatctgggactaccagaacaagacg
tgcgtccaaacactggagggacacgcacagaacgtgtcatgcgtctctttccaccccgaa
ctgcccatcatcatcaccggctccgaggacggtacggtgcgaatctggcactcaagcacc
taccgtctggagagcacgctaaactatggcatggagcgcgcctggtgtgtgtctggactg
cgtggctccaacaccatcgccctgggctacgacgagggcagcatcattgtcaagttggga
cgcgaggagccggccatgtcgatggactcgagcggcaagatcatctgggcgaagcactct
gaagtgcaacaggccaatctgaaggccatgggcgaggcggagatcaaggatggcgagcgg
ctgcctctggctgtcaaggacatggggagctgcgagatttacccacagactatctcgcac
aaccccaacggccggttcgtggtggtgtgcggtgacggggaatacatcatctacactgcc
atggctctgcgcaacaagagctttggctcggcgcaggagtttgtctgggcccacgactcg
tctgagtacgctattcgagagaacagcagcactgtgaaactgttcaaaaacttcaaggag
aagaaatctttcaaacccgactttggagcagaaggaatctacgggggctttctgttgggt
gtgcgctccatgagtgggttggcgtttttcgactgggagagcacagagctcgtccgacgc
attgagatccagcccaaaaatatcttctggtcggattctggtgagctggtcgccttggca
acggaggactccttcttcatcctgcggtaccactcggagaaggtggtggccgcacaggag
acgcaccagggcgttacagaggatggcgtcgaggatgcgttcgaggtgctgggcgagatc
caggaggtggtgaagaccggcctgtgggtcggggattgcttcatctacactaactcagtc
aaccgcctcaactattacgtgggcggcgaaattgtcaccattgcacatctggacaggacg
atgtacctgcttggctacatccccaaggacaaccggctgtacctgggcgataaggagttg
aacatggtgagctattcgctgcttctgtccgtgctggagtaccagacggccgtgatgcgg
cgcgacttcgacatggccgacaaggtgctgcccacgatccccaaggagcagcgcacgcgc
gtcgctcacttcctggagaagcagggattcaagtcgcaggcgttggccgtatcatgtgac
cccgagcaccgctttgagttggcgctgcagctcggggaattgaagattgcgtaccagctc
gccactgaggcagagtctgagcagaagtggaagcagctggcggagctggcgacgtcacgc
tgtcagttccagctggcgcaggagtgcctgcaccgtgcgcaggactacggcggcctgctt
ctgctcgccacagcctcgtcggaccaggccatggtgacgcggctcgcgcagggcgccgag
cgcgatggcaagaacaacgtcgccttcctctcctacttcctgcaggggaacctggataag
tgtctggaggtgctgatcaacaccaatcgcctgccagaggcggccttcctcgcccgcaca
tacttgcccagcgaagtgtcaagggtagtgaagctgtggcgcgagtcgctggccaagagc
aaccagaaggcggccgactcgctcgccgaccctaccgagtacgagaacctcttcccgggc
ctgcgcgaggccgccgctggcgaactctacctgcgcactacatcttctacacggcttgca
tgccagtacccccttgtgacgccaaacgaagaacgcaacgttcttgaggaggctaagggc
tacacgcccaaagagacgacagctgctaaacagttggttgttggtgtcattcaggaaaaa
ccttcaatcgtgcaggaggaggaaaaggtggaggaggtggaagaggaggtggaggatgat
gtggcagcggaggagcagggagaaaacgacaatgaccctgatgatgatgctgatgttgtt
gaggacacggataaaaaaaatcttgaattggtcaccgctaacagcgatgactgcacaccc
ggagctggagccgaggcagcagacatccacaagagtgagcctgttgttctttcaaaggag
gaaaagacgttgcaggagctggaggaagacctggacaacctggagattgacgagaacatc
gatacatccgacatcaacctcgacgaggactttgagtga
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