Petromyzon marinus (sea lamprey): 116946865
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Entry
116946865 CDS
T09614
Name
(RefSeq) Y-box-binding protein 1-like
KO
K06099
cold shock domain protein A
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116946865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116946865
03041 Spliceosome [BR:
pmrn03041
]
116946865
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, DbpA-like
116946865
Spliceosome [BR:
pmrn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116946865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
116946865
NCBI-ProteinID:
XP_032817983
UniProt:
A0AAJ7TJY7
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All DBs
Position
28:1783828..1792213
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AA seq
331 aa
AA seq
DB search
MSEAAAQPEKPRPAVAEKKIIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKN
NPRKYLRSVGDGEVVEFDVVEGEKGAEAANVTGPGGTAVQGSRYAADRRRFRGGYYAGPR
RGRGGARNGGEGGDGAEEALEEEDDQAGYQTQTRRPAYRGRRYPPYYGGEAGEGEEGAGD
AGVDGTAPPRRPGGRGFTRPYRSRRGPVRPRAGPPGEGGAEDKENEAGEERPFRAQQQQN
FRRPYYSRGRGRGARRGGGAAAGEGGKAAAGSGGEASGAAATTTTTSGSGTAASATTTTT
ATSAGGEATAAAAPPSPAVAAAPSEPPAAAE
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggccgcggcgcagcccgagaagccccggccggcggtcgccgagaagaaaatc
atcgccaccaaagttctcggcaccgtcaagtggttcaacgtcagaaacggatacggcttc
atcaaccggaacgacaccaaggaagatgtctttgtccaccagactgccatcaagaagaac
aacccaaggaaataccttcggagcgtgggggacggagaggtggtggagtttgacgttgtg
gagggagagaagggtgccgaggcggccaatgtgaccgggccgggtggaacggcggtgcag
ggcagccgctacgcggccgatcgccggcgcttccgcgggggttactacgccgggcctcgc
cggggccggggaggggcgcgcaatggtggcgagggcggcgatggagccgaggaggcgttg
gaggaggaggacgaccaggccgggtaccagacacagacgcgacgtcccgcctaccgcggc
cgtcgctacccgccctactacggcggcgaggctggcgagggcgaggaaggcgccggtgac
gccggagtggacggcacggctccaccacgccgcccaggcggccgcggtttcactcgcccc
taccgcagtaggcgcgggcccgtgcggccccgcgccggcccccccggggagggtggcgcc
gaggacaaggagaacgaggccggagaggagaggccgttccgtgcccagcagcagcagaac
ttccgccggccgtactacagccggggtcgaggccggggggcgcggcgcggaggaggtgcc
gccgccggagagggcggcaaggccgcggccggcagcggaggggaggcgagcggcgccgca
gccaccaccaccaccaccagcggcagtggcaccgcggcctccgccacgaccaccacgacc
gccacgtccgcagggggagaggccaccgccgccgcagcgccaccatccccagcggtggcg
gcggcgccgtccgagccgcctgctgctgctgaatga
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