Petromyzon marinus (sea lamprey): 116946877
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Entry
116946877 CDS
T09614
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116946877 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116946877 (LIG3)
Enzymes [BR:
pmrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116946877 (LIG3)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
116946877 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
116946877
NCBI-ProteinID:
XP_032818001
UniProt:
A0AAJ7X1M5
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All DBs
Position
28:2212989..2234185
Genome browser
AA seq
1017 aa
AA seq
DB search
MPLASFWTTTVSPPLLLLLLGRWAVGRARCTALPPLLSRTGSQRLTWPLKSTRSVFLLQR
GPVSFLLRRDPPLLASAIAAMAEQRYCVDYARLGTAGCKKCKEKIAKGLVRIGKIVANPF
GDGGGEMKEWHHVRCIFERLERSRPSTRRIEDLSDLEGYERLLDPERELINGCIEDLIMK
RGASPRKPAGQTKPALASPFRMEVSSGPSMTGPRKFSGFSATPTTTITAAAAAVPSRPSG
TAAYDPSHKDCLFREFRKLCAMIAEQPSYNSKTQIVHDFLRKGTSGDGFRGDVYLTVKLL
LPGVVKSVYNIKDKQIVKLFSSVFNCSLDDMVRDLEKGDVSETIRVFFEASSNFTPTAKS
TLTMQEVEGFLGRLALLTKEEEQQGELQDIARRCTSNDLKCIIRLIKHDLKMNAGAKHIL
DGLDPNAYDAFKASRNLEDVVDRVLQNWQDGSRKALSVTASLMTPVQPMLAEACKSVAYA
MKKCPNGMYAEIKYDGERVQVHKNGDSFQYFSRSLKPVLPHKVAHFRDYIPKAFPGGTSM
ILDAEVLLIDTSTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGESLMDRSIKDRRK
FLHDNMVEIPNHILFSEMKHVTRASDLAEMISRVIKEGLEGLVLKDVLGIYEPGKRHWLK
VKKDYLNQGAMADTADLAVLGAYYGHGSNGGIMSIFLMGCYDENSGRWCTVTKCSSGYDD
ATLNRLQKELEMVKISKSASKIPDWLKINKTYFPDFVIRDPKKAPVWEITGAEFSKAEAH
SADGISIRFPRCTRMRDDKDWRSATTLQQLKELFKKSKENSDVMDLLGSTVKNDSESAPA
TPGGSTNGSGSSSPKQGPSTTTTTSSSSKAKASHKASRGASASRKPKQPSRADTKPVLAP
ALALAPAVIPPVMPPAPVKRKRSAEAQEETLLNIFTGVRLHLPASAEGYDRARRYFFAYD
GDLVPDHDMDSATHAVAAAAAPADSGGPPAALPPKAQRVSVDWIWQCVKRRRLVPPC
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgccccttgcttctttctggacaacgacggtgtcgccgccactgctgctgctgcttctg
ggccggtgggctgtcggccgggcgcggtgcaccgcactacctcctctcctgtcacgcacg
ggcagccagcgtctgacgtggccccttaaatccacgcgctccgtcttcctccttcaaagg
ggccccgtctccttcctcctccgccgagacccccccctcctcgccagcgccattgcagcc
atggcggagcagcgctactgtgtggactacgccaggctgggcacggcgggctgcaagaag
tgcaaggagaagatcgccaagggcttggtgcgcatcggcaagatcgtggccaatccgttt
ggcgacggcggcggcgagatgaaggagtggcaccacgtgcgctgcattttcgagagactg
gagcgctcaaggccctccacccggcgcatcgaggacctgagcgacctggaaggctacgag
cggctcttggaccccgagcgggaactcatcaatggctgcatcgaagacctcatcatgaag
aggggagcgtcaccacgtaagccggcaggccagaccaagccagcattggcctctcctttt
aggatggaggtgtccagtgggccatcaatgacaggcccacgcaagttctccgggttctca
gccacacccacaacaacaataacggcggcggcagcagcggtgccctcccggcccagcggc
accgcggcatatgacccgagccacaaggactgcttgtttcgcgagttccgcaagctgtgc
gccatgatcgccgagcagcccagctacaacagcaagacgcagatcgtccacgacttcctg
cgcaagggcacgtccggagatggtttcagaggcgacgtgtacttgacggtgaagctgctc
ctaccgggcgttgtcaagtccgtctacaacatcaaggacaagcaaattgtgaagctcttc
agcagcgtgttcaactgcagcctggatgatatggtgcgcgacctggaaaagggcgacgtg
tcggagacgatccgcgtcttcttcgaagcgagcagcaacttcacccccaccgccaagagc
acgctgaccatgcaggaggtggagggcttcctggggagactcgccctgctcaccaaggag
gaggagcagcaaggcgaactgcaggacatagcgcgccgatgcacctccaatgacctcaag
tgcattatccgcctcatcaagcacgacctcaaaatgaatgctggcgcaaagcacatcctg
gatgggctggacccgaacgcgtacgatgcgttcaaggcatctcggaacctggaggacgtt
gtcgaccgcgtcctgcagaactggcaggatggttcgcggaaagcactttccgtcacggcc
tccctcatgacgcccgtgcagcccatgctggcggaagcgtgcaagtctgtggcgtatgcc
atgaagaagtgtcccaacggcatgtacgctgagatcaagtacgatggggagcgcgtgcag
gtgcacaagaacggagactccttccagtacttcagccgcagcctcaagcccgtgctgccc
cacaaggtggcgcacttcagagactatatccccaaggcattcccggggggcaccagcatg
atcctggatgcggaggtgctgctcatcgacacgagcacaagcaaaccgctgcccttcggc
acgctcggggtgcacaagaaagctgcatttcaggacgctaacgtgtgtctgtttgtgttc
gactgcatttacttcaacggggaaagcctcatggacaggagcatcaaagatcggagaaaa
ttcctccacgacaatatggtcgaaatccccaaccacatcttgttttcggagatgaagcac
gtgacgagagcctcggacttggctgaaatgatctcccgggtcattaaggagggtctggaa
gggctggtgttgaaggacgtcttgggaatctacgagcccggcaagcggcactggctcaag
gtgaagaaggactacctcaaccagggcgccatggcggacacggcggacttggctgtgctg
ggcgcatactatggccacggcagcaatggtgggattatgtccatcttcctcatgggctgc
tacgacgagaactcggggcgctggtgcacagtgaccaagtgctccagtgggtacgatgac
gccaccctcaatcggctgcagaaggagctcgaaatggtcaagatcagcaagagtgcatca
aaaatccccgactggctgaaaatcaacaagacatacttccccgacttcgtcatccgcgac
ccaaagaaagcgccagtgtgggagatcacgggcgcagagttctccaaggccgaggcacac
tcggccgacggaatctccatccgcttcccgcgctgcacgcgtatgagggacgacaaggac
tggcgcagcgccacgaccctgcagcagctcaaggagctcttcaagaagtctaaggagaac
tcggacgtgatggacttgctcggatcaaccgtgaagaatgactccgagtcagcgccggcc
acgccggggggcagcaccaacggctcgggctcctcctcccccaagcagggcccctccacc
accaccaccaccagcagcagcagcaaggccaaagcctcgcacaaagcctcacgcggcgcc
tctgccagccggaagcccaagcagccgagtcgcgccgacacaaaaccggtgttggcaccg
gcgttggcgttggcaccggctgtaattccgcccgtgatgccacctgcgccagtgaagagg
aagaggagcgccgaggctcaggaagagacgctgctcaacatcttcacgggcgtgcgcctg
cacctgccggcgtccgcggagggctacgaccgcgcgcggcgctacttcttcgcctacgac
ggcgacctggtgcccgaccacgacatggactcggccactcatgcagtggcggcggcggcg
gcaccggcggacagcggggggccccccgcggcactcccgcccaaggcccagcgcgtttcc
gtcgactggatctggcagtgtgtcaagcggcggcgcctcgtgccgccgtgctga
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