Petromyzon marinus (sea lamprey): 116946952
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Entry
116946952 CDS
T09614
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1
KO
K22659
calsyntenin 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmrn04515
]
116946952 (CLSTN1)
Cell adhesion molecules [BR:
pmrn04515
]
Cadherins
Cadherin related
116946952 (CLSTN1)
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Laminin_G_3
Cadherin
Laminin_G_2
NnrU
Glyco_hydro_16
PFF1_TM
V_ATPase_I
Serinc
Presenilin
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
116946952
NCBI-ProteinID:
XP_032818133
UniProt:
A0AAJ7TK87
LinkDB
All DBs
Position
28:complement(5841199..5985620)
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AA seq
1070 aa
AA seq
DB search
MPESHGVKTSATARLSLHRDASRHSPLPALLATGAHSYFYYYIVQLFLRENGACTIATPL
PLLQSFKLKKGDSRQDASYSSMIPCRRAVLGIVLACLFCVSSARKVNKHRPWLEDVYHGV
LKETEQIVMMELPLIALDKDAPLPYAGEICGFRVSGAGDIPFEVVLVDGQSGEGLVRATH
PLGCPSRGPDDADTANKARRDYTFSVQAYDCGEGPDGTGQKKSRKAMVHVRVKSVNRHAP
EFLQGEYSASVDEAAEPGAALVRVEASDGDCSPLFGRVCDYQILTAGAPFSIDSDGVIRA
TERLSYELHGEQQLTVAAYDCGKRRSAEDALVTIGVRPVCRPGWQGWNKRVEYDPGSGGR
ALFPGARLETCGRRVASARATVELQTAHIGKGCDRETYAENSRRKLCGASTGGVDLLPSP
ELPGSWTQGLPTEVPEGPDSTGERVFLFDGTRAALVPDAAVPANLTHRFTLAAWLRHGPL
SGPAQRSEKEAILCNSDKAGMNRHHYSLYIHNCRLVFLLRSEFSQTDTFRPAEFHWKLDQ
VCDKEWHHYVITVDTPTVTLYVDGVSYQPYLVTDDWPIRPGKSQSQLAIGACWHGGEQPS
PRFAQFFRGDIAGFTVLPGHVETQAVVACLHACKESLDLPALPNASSAVKVHFNPTRLTL
TLEVEGHDLEQLTEAVKRVAYVNTRQFPTPGPRDLHLATVLHCVEEGCPDVPEVSAYVMV
LQPEDPHIVLSGADSFARPAGEFPDGVVLFPDLRVVSSVTREVPSDVGGQEAVVSEEILH
NLDRCEVAALGDPLEGPQERFEVPADQLSPQGLEVTSGPQGITISGVESLASYERVLRTV
RYLHNNPDSLFERRFRLTCSELNGRYASNSLPLDVTVLHVVRASEHVNHARVQPEFVHSV
HYPELSGHSLTATAHSNAIPGTATVVIVLCVGFLVFAIVLGVVRARSANQRGAREQEGSR
DNEMDWDDSALTITVNPMESYGGEQASEAESEVEADAEEEEEEEEEEEEEEEEEEEEEEE
EEDDITAAESEESGAEEGDGEAGVRASVEQQQPRHAPREQLEWDDSTLTF
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaatcccacggcgttaagacctcagccacagctcgtctctcactccaccgcgac
gcatctcgccattctccgctgccggcgttgcttgcgactggagcgcattcttatttttat
tattatatcgtccagttatttctccgggagaacggtgcttgcaccatcgccacccccctc
cccctcctccaatcgtttaaattaaaaaaaggtgattcgcgacaagacgcttcttactcc
agcatgattccgtgccggcgagctgtgctgggcatcgtgctggcttgcctcttctgcgta
tccagcgccagaaaggtaaacaagcaccggccatggctggaggacgtctaccatggcgtg
ctcaaggagacggagcagatcgtcatgatggagcttcccctcatcgccctcgacaaggac
gctccgctgccctacgccggagagatatgcggtttccgcgtaagtggcgcgggcgacatc
cccttcgaggtggtgctggtggacgggcagagcggtgagggcctcgtgagggccactcac
ccgctgggttgtccatcgcgggggcctgacgacgccgacaccgccaacaaggctcgccgt
gactacaccttctccgtgcaggcctacgactgtggtgagggcccggacggaaccggccag
aagaagtcacgcaaggccatggtgcacgtgcgggtaaagagcgtgaaccgccacgcgccc
gagttcctgcagggcgagtacagtgccagcgtggacgaggccgcggagcccggcgccgcc
ctcgtgcgcgtcgaggcgagcgacggggactgctcgccgctcttcggccgcgtctgcgac
taccagatcctcaccgcgggcgcgcccttctccatcgactccgacggagtgatccgcgcc
acagagcgcctgtcatacgagctgcacggcgaacagcagctgaccgtggcggcgtacgac
tgcggcaagcggcgctccgccgaggacgccctggtcaccatcggcgtgcggcctgtgtgc
aggcccggctggcagggctggaacaagcgtgtggagtacgatccgggcagcggcggacga
gcactcttccctggtgcccggctggagacgtgcgggcgccgcgttgcgtcggcacgcgcc
accgtcgagctccagacggcgcacatcggcaagggctgcgaccgagagacctacgcggag
aactcgcgccgcaagctctgcggcgcttcgaccggcggagtcgacctgctgccgtcgccg
gagctgccggggtcctggacccaggggctgcccacggaggtccccgaggggcccgactcg
accggcgagcgcgtcttcctcttcgacggcactcgggccgccctggtgcccgacgccgcc
gtgccggcaaacctgacgcaccgcttcacgctggccgcctggctccgccacggcccgctc
tcgggacccgcgcagcgctccgagaaggaggccatcctctgcaattctgacaaggctggt
atgaaccgccaccactactcgctctacatacacaactgccgcctcgtctttctcctccgg
tcggagttttcccagacggacacgttccgccccgccgagttccactggaagctggaccag
gtgtgcgacaaggagtggcatcactacgtcatcacggtggacacgcccaccgtcacgctg
tacgtcgacggggtttcctaccagccctacctcgtcaccgacgattggccaatccggccg
ggaaagagccaatcgcagctcgccatcggggcctgctggcacggcggcgagcagccatct
ccgcgcttcgctcagttcttccgcggagacatcgcgggcttcacagtgctgccggggcac
gtggagacgcaggccgtggtggcgtgccttcacgcctgcaaggagagcctcgatctgccc
gccctgcccaacgcctccagcgccgtgaaggtgcacttcaacccgaccaggctgaccctc
acgctggaggtggaaggtcacgacctggagcagctgacggaggccgttaagcgcgtggcc
tacgtcaacactcgccagttccccacgccgggcccccgcgacctccacctggccacggtg
ctccactgcgtggaggagggctgcccggacgtcccggaggtgagcgcgtacgtcatggtg
ctacagcccgaggacccgcacatcgtgctcagcggcgccgactcgttcgctcggcccgcc
ggggagttccccgacggcgtggtgctcttccccgacctgcgggtcgtgagctccgtcacc
cgcgaggtgcccagcgacgtgggaggccaggaggccgtggtgtccgaggagatccttcac
aacctggaccgctgtgaggtcgcggcacttggcgaccccctggagggcccccaggaacgc
tttgaggtgccagccgaccagctgagcccccagggcctggaggtcaccagcggcccccag
ggcatcaccatctccggagtggagagcctggcgagctacgagcgtgtgctgcgcactgtg
cgctacctgcacaacaacccggactcgctgttcgagcgccgcttccggctcacgtgctcc
gagctcaacggccgctacgccagcaacagcctgccgctcgacgtgacggtgctgcatgtg
gtgcgtgcgtcggagcacgtgaaccacgcgcgcgtgcagcccgaattcgttcactcggtt
cactaccccgagctctcgggacacagcctcacggcgacggcgcacagcaacgccatcccc
ggcacggccacggtggtcatcgttctgtgcgtgggcttcctcgtcttcgccatcgtgctg
ggcgtcgtgcgcgcccgctcggccaaccagcgcggagcacgtgagcaggagggctcccgc
gacaacgagatggactgggacgactcggcgctcaccatcaccgtcaaccccatggagtcg
tacggcggcgagcaggcgagcgaggcggagagcgaagtggaggcagacgccgaggaggaa
gaggaagaagaggaggaggaggaggaggaggaagaggaggaggaagaagaggaagaggag
gaggaggacgacatcacggccgccgagtcggaggagagcggcgccgaggagggagacggg
gaggccggggtgcgcgcctctgtggagcagcagcagccgcggcacgccccccgtgagcag
ctcgagtgggacgactcgaccctgaccttctag
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