Petromyzon marinus (sea lamprey): 116947218
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Entry
116947218 CDS
T09614
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03013
Nucleocytoplasmic transport
pmrn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116947218 (PNN)
03015 mRNA surveillance pathway
116947218 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116947218 (PNN)
03041 Spliceosome [BR:
pmrn03041
]
116947218 (PNN)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116947218 (PNN)
Spliceosome [BR:
pmrn03041
]
Complex C
Other components
EJC/TREX
116947218 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Synapsin_N
Motif
Other DBs
NCBI-GeneID:
116947218
NCBI-ProteinID:
XP_032818613
UniProt:
A0AAJ7TL69
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Position
29:5483546..5494124
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AA seq
613 aa
AA seq
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MAVEASSLREQLERARQSLHSVDENIKKLTGRDPNDLRPGPGRRLSLTGGPQGLGRGRGM
GLLRRGLSDTGLLAGMGGPPAKKRDLEGTMGRPGPERRVRRESHPESDAEDDEDVQKPAV
QSSVVNTAKERTRRDLIHDQNPDEKGRQRNRRMFGLLMGTLQKFKAEASEENEKQKRRHE
IEAKVEEQAEEERRALALERRELFEERRNQQATLRLLEVKVQLAHLQEEWDAHNQKLLPF
IRTKTKPHMFFLPAKMNPDTQKLLEESQKTLSDEFAKRRADFLEEIERMEVRPRRARIRG
RLGPTPDGDGDLGGGPPWLGEGPETEDVEGKAKMGDVGEDTDGAPVQDVEMSGGPEGEQA
GQDQPEQEKGSFEAKHQEEGMEEGEVGEVGERAQPEGQEVSKPEETKTPVAKEECSERRR
ESDRGQRIRIVRRGPERDRGGSPDRRRDGWDRRRGVMGFGGSRSHEQGGSGGGRRRRHSS
ERGRREREPVRRSPRPRSPRHARHLERGDKNETHRKVRAGSDGDKKGGHSGEGGHRGERQ
RRLSEGGARRRHSEGHRGGEAGKRLSSEGSAEKGKEAEAAGQQGDTTGEDVQMMVPAVET
EGQEEPGAQAVES
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaggcgtcgagcctgcgggagcagctggagcgcgctcgccagagcctccac
agcgtggacgagaacatcaagaagctgacgggacgcgacccaaacgatttgcggcctgga
ccgggcaggcggctgtccctcacgggtggaccccagggccttggcagggggcgaggaatg
gggcttctgaggcgtgggctctcggacacggggctactggcaggaatgggcggaccgccg
gccaagaagagagatctggaaggaacgatgggcaggccggggccagagcggcgggtccga
cgtgaatcccaccccgagagcgacgccgaggacgacgaggacgtgcagaagcccgcggtg
cagtcatcagtggtgaatactgccaaggagcgaacacgccgagacctcatccatgaccag
aacccagacgaaaagggacggcagaggaatcggcgaatgtttgggctgttaatggggacc
ctgcaaaaattcaaggccgaggcatcggaggagaacgaaaagcaaaagcggcggcacgag
attgaggcgaaggtagaggagcaggcggaggaggagcggcgcgctctggcgctggagcgg
cgtgaactttttgaggagcggcgcaaccagcaggcaacactgcgcctgctcgaggtcaag
gtgcagctggcgcacctgcaagaggagtgggatgcacacaaccagaagctgctcccgttc
atccgcaccaagacgaagccgcacatgttcttccttccggccaagatgaaccctgacacg
caaaagctgctggaggagtcgcaaaagactctgagtgatgagtttgcgaaacgacgcgcc
gacttcctggaggagattgaaagaatggaggtgcggccacgacgcgcgaggatccggggg
cggttgggtcccacgccggacggagacggggacctggggggcggccccccctggctgggg
gagggccctgagacagaggacgtggagggtaaggcgaagatgggggacgttggagaggac
acggatggagcgccggtgcaggatgtagagatgtcgggcggccctgagggtgagcaggca
gggcaggatcaaccagagcaggagaagggcagcttcgaggccaagcaccaggaggagggg
atggaggagggggaggtgggggaggtaggggagagggcccagcctgaagggcaggaagtg
agtaagcctgaagagacgaagacaccggtggccaaggaggagtgtagcgagaggcgcagg
gagagcgatcgtgggcagcgaatccgcatcgtgcggcgggggccggagcgtgaccggggg
ggcagcccagacaggcggcgcgatggctgggaccggcgcaggggggtcatgggattcggg
ggcagccgcagccacgagcagggcggctcgggaggggggcggcggcggcgccatagctcg
gagcggggacgtcgggagcgggagccggtgcggcggagcccccgcccacgctcgccccgt
cacgcgcgccacttggagcgcggtgacaagaacgagacccacaggaaggtcagggctggg
tcggatggggacaagaagggggggcacagtggggagggggggcacaggggggagaggcag
cgcaggctctcagagggcggggctcgtcgcaggcatagcgaggggcacaggggaggcgag
gccgggaagcggttgtcctcggagggcagcgccgagaaaggtaaggaggcagaggccgca
gggcagcagggcgacacaacaggggaggatgtgcagatgatggtgccagcagtggagacg
gagggtcaggaggagccgggggcacaggcagtggagtcgtag
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