Petromyzon marinus (sea lamprey): 116947333
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Entry
116947333 CDS
T09614
Name
(RefSeq) endothelial PAS domain-containing protein 1-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04137
Mitophagy - animal
pmrn04140
Autophagy - animal
pmrn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116947333
04137 Mitophagy - animal
116947333
04148 Efferocytosis
116947333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116947333
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116947333
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1a_CTAD
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
116947333
NCBI-ProteinID:
XP_032818826
UniProt:
A0AAJ7X2E9
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Position
29:complement(9610150..9655301)
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AA seq
839 aa
AA seq
DB search
MSADKEKKSRVNSERRKEKSRDAARCRRSNETEVFYELANELPLPHSVTSHLDKASIMRL
AISYLRMRKLLHNGAVVEDCQEEMDSLFGKALEGFVMALTEEGDMVFLSDGVNKCVGLAQ
VDLMGHSIFDFVHPCDQEEVREMLVYRQAAGKKAKEGSTERDFFMRMKCTLTNRGRTVNL
KSASWKVLHCSGHMKLYEGSAASAGGGGFREPPLVCLVMTCEPIPHPSNIEVPLDSKTFL
SRHSMDMRFTYCDERITELIGYQPDELLGRSVYEYYHALDSDHMTKSHHNLFTKGQAVTG
QYRILAKGGGYAWVETQATVIYSSRNSQPQCVVCVNYVLSGIVENDTIFSLEQTERLFKP
NKAAVGQVASEGTDEEEDMALLYTQLKNEPDELAQLAPTAGDVVVPLDFGTGLASFDDVP
LYNDVMMAASPEPMPSPATPTKAFAELPAAVVAVTEAGPVGDPSLTAPQHSSGPSSPSGS
PATAPSTAPNSPSDYYSAVGGDLKVDLIEKLFAVDSEIKEGSFKHDDMDLEMLAPYIPMD
GDDYQLCTLSLQDSLTLPPDGSALSSPGQSERSSSSSMVDAPTPACGPTSLPPAAPQPPS
PSLAAPEGPASPSSRHTATMPAEQANLIVTSSQSKLAPTAPPPFTMSTVHILISGTTPVG
TTLPGGLVSAVPWSSTATTTTGAVVSAPTTIVLLQQAPRAQTVASLPSTVVVSGSDASLA
KASLTTIASAVKRKWQTGTTGPLLQQVVINKQEGANKTQFLAELPSKRSKASQDVEAEAL
TSDLVSRLLGPTLEDITLPMLNSYDCEVNAPVQDSRTLLQGGTSWQQSLSAVKTRETEI
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggataaagagaaaaagagcagggtgaactctgagcggcggaaggagaagtct
cgcgacgctgcgcgatgtcggcgcagcaacgagacggaggtgttctacgagctcgccaac
gagctgcctctcccccacagcgtcacctcgcacctcgacaaggcctccatcatgcggctc
gccatcagctacctgcgcatgcgcaaactgttgcacaacggagcggtggttgaagactgc
caagaagagatggacagcctcttcggcaaggccctggagggcttcgtcatggccctcacg
gaggagggcgacatggtgttcctgtcggatggtgtcaacaagtgtgtgggcctggcccag
gtggacctcatgggtcacagcatcttcgactttgttcacccatgtgaccaagaggaggtg
cgggagatgctcgtatacagacaagcagcgggaaagaaagcgaaggaggggagcactgag
cgagacttcttcatgaggatgaagtgcacgctcacgaatcgcgggcgcaccgtcaacctc
aagtccgcatcgtggaaggtgctgcactgcagcgggcacatgaagctgtacgagggcagc
gcggcgagcgccggcgggggcggcttccgggagccgccgctcgtgtgcctcgtcatgacc
tgcgagcccatcccgcacccgtccaacatagaggtgccgctcgacagcaagaccttcctg
agccgccacagcatggatatgcgcttcacctactgcgacgagaggatcacagagctgatt
ggctaccagcccgatgagttgcttggccgttcagtctacgagtactaccacgccctggac
tcggaccacatgaccaagagccaccacaacttgtttaccaagggccaggccgtgacgggg
cagtaccgcatactggccaagggcgggggctacgcatgggtggagacccaggcgaccgtc
atctacagctcccgcaactcccagccgcagtgcgtcgtctgtgtcaactacgtgctcagc
gggatcgtggagaacgacaccatcttctcgctggagcagaccgagcgtctcttcaagccc
aacaaagcggcggtgggacaagtggcgagcgagggcacggatgaggaggaagacatggcg
ctgctctacacgcagctcaagaacgagcccgacgagctggcacagctggcacccacggcc
ggcgacgtcgtggtgcccctcgactttggcacgggcctggcgtcgttcgacgacgttccg
ctctacaatgacgtcatgatggccgcctcgcccgaacccatgccgtccccggcgacgccg
accaaggctttcgccgagctccctgcggcggtggtggcggtgacggaggccggccccgtg
ggcgacccgtccctcacggcgccgcagcattcgtccggtccttcgtcgccctccggctcc
ccggcaacagctccgtccacggcgccgaacagccccagtgattactactcggccgttggg
ggtgacctgaaggtggacctgattgagaagctgtttgccgttgactcggagatcaaggag
ggcagcttcaagcacgatgacatggacctggagatgctggcaccgtacatcccgatggat
ggcgacgactaccagctgtgcacgttgagcctgcaggactcgcttacgctgccgcccgac
gggtccgccctctcctcgcccgggcagagcgagcggtcatcatcatcgtcaatggtggat
gctccgaccccggcctgcggccccacatcattgccccccgccgccccgcagcccccgtcg
ccgtcgctagcggcaccggaaggccctgcctccccgtcgagccggcacacggccacgatg
ccggcagagcaggcgaacttaatcgtgacgagcagccagagcaagttagcgccgacagcc
ccgccgccgttcaccatgtccacggtgcacatcctcatcagcggtacgacgccggtcggc
accacgctgcccggtggactcgtgtcggccgtcccgtggtccagcaccgccaccaccacg
accggcgccgtcgtaagcgcgcccaccaccattgtcctgctgcagcaggcgccacgtgcg
cagaccgtcgcctccctgcccagcaccgtcgtggtcagcggcagtgacgcgagtctcgcg
aaggcgtcgctgacgacgattgcgagcgccgtcaagcgcaagtggcagacgggcaccacg
gggcccctcctccagcaggtcgtcattaacaaacaggaaggtgccaacaagacgcaattc
ctagcggaattgccgtcgaaacggagcaaggcatcgcaagacgtggaagcggaggcgctt
acgtcagacctcgtcagccggctgctgggcccgactctggaggacatcacgctgccgatg
ctcaacagctacgactgcgaggtgaacgctccggtgcaggacagccgcacgctcctgcag
ggcggaacaagttggcaacagtcactttccgccgtcaagactagagagacggagatttaa
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