Petromyzon marinus (sea lamprey): 116947760
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Entry
116947760 CDS
T09614
Symbol
ERCC2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03022
Basal transcription factors
pmrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116947760 (ERCC2)
09124 Replication and repair
03420 Nucleotide excision repair
116947760 (ERCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116947760 (ERCC2)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116947760 (ERCC2)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116947760 (ERCC2)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116947760 (ERCC2)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116947760 (ERCC2)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
116947760 (ERCC2)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116947760 (ERCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
nSTAND3
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116947760
NCBI-ProteinID:
XP_032819762
UniProt:
A0AAJ7TKW9
LinkDB
All DBs
Position
31:complement(5691503..5716478)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLDIEGLVVYFPYEFIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ
RAFPNEVQKLVYCSRTVPEIEKVIEEMKKLVAYYEKHTKEPMKFLALSLSSRKNLCIHPE
VSALRFGKEVDGRCHSLTASYVRNRHSSDGSVPVCSFYEDFNTNGREVPMPPGIYSLDDL
KEYGRQKHWCPYFLARYTIMHANVVVYSYHYLLDPKIADLVSKEMSKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCSTNIETLQTTIQKIRETDATKLKEEYRRLVEGLRDASVARE
TDVHLANPVLPDEVLQEAVPGNIRNAEHFVSFLKRFVEYLKSRLRVTHVLSESTPAFLKE
TYDRICIDRKPLRFCSERLRSLLRTLEIADIADFSPLTLVCNFATLVSTYTNGFTLIIEP
FEDKTPTILNPILRFSCMDASIAIKPVFSRFQTVIITSGTLSPLDMYPKILDFRPVTMAS
FTMTLARTCLCPIIVARGNDQVTMSSKFETREDIAVIRNYGNLLLEMTCVVPDGVVCFFT
SYHYMESIVAAWYEQGILENIQRNKLIFIETQDGAETSVALEKYHEACENGRGAVLLSVA
RGKVSEGIDFVHHYGRAVIMFGIPYVYTQSRILKARLEFLRDHYQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGVMVFADKRYSRADKRGKLPRWIQEHITDANLNLTIDEALQVTKHF
LRLMAQPFRREDQLGLSLLTLEQLQSEDMLRKIEQIAHQL
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggacatagagggactggtcgtgtactttccgtacgagttcatctaccccgag
cagtactcgtacatgctggagctcaaacgcacgctggatgccaagggtcatggcgtgctg
gagatgccttcgggcacagggaaaacggtctcgctcctcgctctcatcgtcgcataccag
cgggcattccccaacgaggtacagaagcttgtgtactgctcacggacggtgcccgagatt
gaaaaggtgattgaggagatgaagaagctggtggcttattacgagaaacacacgaaagag
ccaatgaagttcctcgcgctctccctcagctcccgcaagaacttgtgcattcaccccgag
gtgagcgccctgcgcttcggcaaggaggtggacggccgctgccactcgctcacagcatcg
tacgtgcgcaaccggcacagctcggacggcagcgtgcccgtctgctccttctacgaggac
ttcaacacgaatgggcgcgaggtgccgatgccgccaggaatctacagcctggacgatctc
aaggagtacgggcgacagaagcactggtgcccctacttcctcgcccgctacacgatcatg
cacgccaacgtggtggtgtacagctaccactatctgctcgaccccaagatagccgacctt
gtctccaaggagatgtccaaaaagtctgtcgtcgtcttcgacgaggcccacaacatcgac
aacgtgtgcatcgactcgatgagtgtgaacatcacacgccgcacgctcgaccggtgcagc
acgaatatcgagactctgcagaccacgatacagaagatcagggagacggacgctacgaag
ctgaaggaggagtaccggcgcctcgtggaggggctcagggacgcgagcgtcgcccgggag
accgacgtccacctcgccaaccccgtgctgcccgacgaggttctgcaagaggcggtgccc
ggcaacatccggaacgcggagcactttgtgtcgttccttaaacgcttcgtggagtacctc
aagtcgcgtctgcgcgtcacgcacgtgctgtccgagagcacccccgccttcctcaaggag
acctatgaccgcatctgcatcgaccgcaagcccctgcggttctgctcagagcggctgcgc
tcgctcctccgcacgctggaaatcgccgacatcgcagatttctctccgctcacgctcgtc
tgcaactttgccaccctcgtcagcacctacaccaacgggttcacgctgataatcgagccg
tttgaggacaaaacccccaccatcctcaacccgattttgcgcttcagctgcatggacgcc
tcgattgcgattaagccggtcttcagccgcttccagaccgtcatcataacctcggggacg
ctgtctcccctggacatgtatccaaaaatccttgacttccgtccggttaccatggcatcc
ttcaccatgaccttggccaggacctgcctgtgccccatcattgtcgcgcgcgggaacgac
caggtgaccatgagctcaaagttcgagacaagggaagatatcgcggtgatcaggaactac
ggtaacctgctgctggagatgacgtgcgtggtgcccgacggggtcgtgtgcttcttcacg
agttaccactacatggagtccattgtggccgcctggtacgagcaggggatcctggaaaat
atccagcgaaacaaactgatcttcatcgaaacgcaggacggagccgagacgagcgtggcg
ctcgagaaataccacgaggcttgtgaaaacggaagaggagccgtgcttctatcagttgcc
agaggcaaggtatccgagggcatcgactttgttcaccactacgggcgggcggtgatcatg
ttcggaatcccgtacgtgtacacgcagagcaggattctcaaggcgcggctcgagttcctg
cgggatcattaccagatccgggagaacgacttcctgacgttcgatgccatgcggcatgct
gcacagtgcgtggggcgtgcaatccgtggcaagaccgactatggcgtcatggtgtttgca
gataagcgctactcgcgagcggacaaacgagggaaattgccgcgctggatccaagagcat
atcacggatgcgaacctaaacctcactatcgacgaggcgctgcaggtcaccaagcatttc
ctgcgcctcatggctcagcccttcagacgggaggaccagcttggactgtctctcttaacc
ctggagcagctgcagtctgaagatatgctgcgcaagatcgagcaaatcgcgcaccagcta
tga
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