Petromyzon marinus (sea lamprey): 116947809
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Entry
116947809 CDS
T09614
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03008
Ribosome biogenesis in eukaryotes
pmrn03013
Nucleocytoplasmic transport
pmrn03015
mRNA surveillance pathway
pmrn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116947809 (NXF1)
03015 mRNA surveillance pathway
116947809 (NXF1)
03008 Ribosome biogenesis in eukaryotes
116947809 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116947809 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116947809 (NXF1)
03009 Ribosome biogenesis [BR:
pmrn03009
]
116947809 (NXF1)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116947809 (NXF1)
mRNA cycle factors
Stress granule specific factors
116947809 (NXF1)
Ribosome biogenesis [BR:
pmrn03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
116947809 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_9
LRR_4
Motif
Other DBs
NCBI-GeneID:
116947809
NCBI-ProteinID:
XP_032819871
UniProt:
A0AAJ7TN31
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All DBs
Position
31:complement(7054706..7078365)
Genome browser
AA seq
689 aa
AA seq
DB search
MSQKQDADQFFDGRHYSEHDDRTGSQAVDRRNRGRGPRLYMDGRSSGSPARSSGGGGSSG
GGGGGGGGGGGRRSGHGYFRGNRKGRNNGGGGGGGGGGGGGRGGGGGRIGGPNPRSHLND
DDDVDMWEDMPSSRARFTPYSTNPNRWRQQQRTDHRRSAVEVTFRPDSTGYGGRPSHSTS
GGHRERSSWYKITIPFGKKYNKTWLLQSLQQASSTPFTPVQFHYEDKRAVFHLEDRAAAE
ALKSISRQIVDTDNFKVAVVMNQSGPPPSLLNDLKEEDLQHIKECLSRRFEPAEQALDLS
GIRNDEELQARGVDLVMNRKSCMDAVTKIISENIPTIMSLNLSSNRLYRLDDLAELAQHT
PSLKTMNLSRNELKSERDLDRIKGFKLEELWLSGNSLCDSFRDQSAYISAVRQRFPKLMK
LDGQELPPPIAFDLEAPTTLPPTREGYFPNDEIKSLILRFLTQYFTVYDSANRQSLLNAY
HDTACCSITIPHSPQNPSKSSLGEYFKESRNIKRLKDPIMRQKLLKHTRLNVVAFLNELP
HTQHDLPSFVIDVSVHLASLLNFTVNGFFKETEGKCRESVRAFSRVFLAVPAANGGLCIV
NDQLFVRNASTEEIRRAFVMPAPTPSSSPVPTLTPLQQEMLQAFSTQSGMNLEWSQRCLQ
QHSWDFERSAQIFTQLNTAGHIPKEAFVK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagaagcaagacgccgatcagttcttcgacgggcgccattatagcgaacatgac
gatcgcacggggtctcaggctgtagaccggaggaacaggggtcgaggccctagactctac
atggatgggaggtcgtcggggtcccctgcacgctctagcggtggaggaggcagcagtggc
ggtggcggcggtggcggcggtggtggcggcggcagaagaagtggacatggatattttagg
ggaaatcggaaaggcaggaataacggtggtggcggtggtggcggtggtggcggcggcggc
ggcaggggaggtggaggtgggagaataggtggcccaaacccccgctcccatctgaatgac
gatgatgacgtggacatgtgggaagatatgccaagttcacgggcgcgattcacaccgtac
tcaaccaatcccaatcggtggcggcagcagcagcggacagaccaccggcgctcggctgtt
gaggtcactttccgtcccgattcgacggggtatggagggcgaccgtcacacagcacaagc
ggaggccacagggagcggtcgtcgtggtacaagatcacgattcccttcgggaaaaagtac
aacaagacgtggcttctgcagtcgctgcagcaggcttcctccacgcccttcactcccgtg
cagttccactatgaagacaagcgggcagtgttccacttggaggaccgcgcggcagccgaa
gctctgaagagcatctcgcggcagatagtggacaccgacaactttaaggtcgccgttgta
atgaaccagtcgggcccaccgccatcgctccttaatgacctgaaagaggaggatctacag
cacatcaaggaatgtttaagcagaagatttgaacctgctgaacaagccctagacttgagt
ggaataagaaatgatgaagagcttcaggcccgaggcgttgacttggtcatgaaccgcaag
agctgcatggacgcggtgaccaagatcatcagcgagaacatacccacaatcatgtccctc
aacttgagcagcaatcgcctgtaccggttggacgacctggccgaactggcccagcacacg
ccgtccttgaagaccatgaacctctccagaaacgagctcaagtccgaacgtgatctggac
cggatcaagggtttcaagctggaggagctgtggctgagtggcaactcgctgtgcgactcc
ttccgtgaccagtcggcctacatcagcgccgtgcgacagcgtttccccaagcttatgaag
ctggatggacaggagcttccgccgccgatcgcgtttgacctggaggcgcccacaactttg
ccgcccaccagggagggttacttccccaacgatgaaatcaagagcctaatcctgcggttt
ctcacgcagtacttcaccgtgtacgattctgcaaaccgccagagtctgctcaacgcttat
cacgacacagcttgttgctccatcaccatcccacacagccctcaaaacccctcaaaaagc
agcctgggcgagtacttcaaagagagccggaatatcaagaggctgaaagatccaatcatg
cggcagaagctgttgaagcacacgcggctgaacgtggtggcatttctcaacgagctgccg
cacacacagcacgacttgccctccttcgtcatcgacgtcagcgtgcacctggcgtccctg
ctgaacttcacagtcaacggcttcttcaaagagaccgaggggaaatgccgtgagtcagtg
agggccttctcgagggtgtttctcgccgtgccggccgccaacggcgggctgtgcatcgtg
aacgaccagctgtttgtgcgcaacgcgagcacagaggagatccgccgcgcgttcgttatg
cccgcgcccacgccgtcgagcagccccgtacccacgctcacgccgctccagcaggagatg
ctgcaggcgttctccacgcaatccggcatgaacctggagtggtcgcagagatgcctccag
cagcacagctgggatttcgagcggtcggcacaaatctttactcaactaaacactgcgggg
catattcccaaggaagcatttgtgaagtga
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