Petromyzon marinus (sea lamprey): 116947847
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Entry
116947847 CDS
T09614
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116947847 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116947847 (MSH2)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116947847 (MSH2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
AAA_29
Motif
Other DBs
NCBI-GeneID:
116947847
NCBI-ProteinID:
XP_032819941
UniProt:
A0AAJ7TL01
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Position
31:8133074..8156026
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AA seq
953 aa
AA seq
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MAAVQAKEQLSLEPAQENGFVSFFASMSEKAEATVRLFDRADFYTVHGRDALLVSRDVFK
TTAVVKMLGTGSRKLESVVLSKMNFESVVRDLLLVRQYRVEVYRNRAGKASRDNDWQLAY
KASPGNLAQFEDILFGNVDMSASAGVVAIKLGLACGVGPGGTAAAAGGSGGADAQRVVGV
GFADTTLRRLCVCEFPDNDQFSNLEALLVQLGPKECVLPAGEVQADAGKLRQVVQRSGLL
ITDRKKVEFSSKDIVQDLNRLLKTRKGEQANSAALSEMEKQVAMSSLAALVKYLELTSDE
SGFGQFELSTFDLGQYVRLDSAAVRALNLFQGSSDEGGRTQSLFGLLNRCRTAQGQRLLA
QWIKQPLLDQNRIEERLDVVESLVDDPDLRQALQDELLRRFPDLGRLSKRFQRRAATLQD
CHRVYQAAGLLPTLVGALRRHQGPRQALLEELFVQPLLELENDFSKFQEMIETTLDMEQV
ENHEFLVKSTFDPNLEELRSRMDELERDMDKALSSTARDLGLEAGKTVKLDSNAQLGFYF
RVTSKEEKALRNNKKYSTIDSQKNGVRFTNSKLSALNEEYVRCRDDYQETQKAIVVEIIN
ISAGYTEPMQLLSDVVARLDVLTSLALVSHSAPVAYVRPRLSPPGGDLVLKGARHPCLEA
QDDVAFIPNDVAFHRAGTTFHIITGPNMGGKSTFIRQTGVIVLMAQMGCFVPCDEASVSV
VDCILARVGAGDSQLRGVSTFMAEMLETSAILRSATENSLVIIDELGRGTSTYDGFGLAW
AISEHVATRLRALCLFATHFHELTALAGHVPSVSNLHVTALTSHQTLTMLYRVRKGVCDQ
SFGIHVAELAHFPPHVVESARRKALELEEFQALDVTSDVDGEPAVKKLRSEREEGEQIVR
DFLDKVKALPLDSMAADEVARSLASLKQEVAERGNAYVNGLVARAGEHGVAAS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgcaggcgaaggagcagctgagcctggagcccgcgcaggagaacggcttc
gtgagcttcttcgcctccatgagcgagaaagccgaggccacggttcgcctcttcgaccgc
gccgacttctacaccgttcacggccgcgacgccctcctcgtctcccgcgacgtcttcaag
accacggcggtcgtcaagatgctgggcaccggctcgcgcaagctcgagtcggtggtgctc
agcaagatgaacttcgagtcggtggtgcgggacctgctgctggtgcggcagtaccgcgtc
gaggtgtaccgaaaccgcgccggcaaggcctcgcgcgacaacgactggcagctcgcctac
aaggcgtccccgggaaacctggcgcagttcgaggacatcctcttcggtaacgtggacatg
tcggcctccgccggcgtcgtggccatcaagctgggcttggcttgcggcgtcggccccggc
gggacggccgccgcggccggcggcagtggcggcgccgacgcccagcgcgtggtgggcgtc
ggcttcgccgacaccacgctgcgccggctgtgcgtgtgcgagttccccgacaacgaccag
ttctccaacctggaggcgctgctggtgcagctggggcccaaggagtgcgtgctgcccgcg
ggggaggtgcaggccgacgccgggaagctgcggcaggtggtgcagcggagcgggctgctc
atcaccgacaggaagaaggtggagttttcctccaaggacatcgtccaggacctcaatcgc
ctgctcaagacgcgcaagggcgagcaggccaacagcgccgcgctgtccgagatggagaag
caagtagcgatgtcgtcacttgccgccctcgtcaagtacctggagctgacgtccgacgag
tcgggcttcggccagtttgagctgagcaccttcgacctgggccagtacgtgcgcctggat
agcgccgccgtgcgcgccctcaacctcttccagggctcgtcggacgaggggggccgcacg
cagtcgctgttcgggctcctcaaccggtgccgcacggcgcagggacagcgactgctggcg
cagtggatcaagcagccgctgctggaccagaaccgcatcgaggagaggctggacgtggtg
gagtcgctggtggacgacccggatctgcgccaggcgctgcaggacgagctgctgcgccgc
ttcccggacctggggcgcctgtcgaagcgcttccagcggcgtgccgccacgctgcaggac
tgccaccgcgtgtaccaggcggcgggactgctgcccaccctcgtcggcgccctgcggcgc
caccagggccctcgccaggccctgctggaggagctgtttgtgcagccgctgctggagctg
gagaacgacttctccaagttccaggagatgatcgagacgacgctggacatggagcaggtg
gagaaccacgagttcttggtgaagtcgaccttcgatcccaacctggaggagctgcggagt
cgcatggacgagctggagcgagacatggacaaggcgctgagctccactgctcgggacctc
ggtctggaggccggcaagacggtgaagctggactcgaacgcgcagctcggcttctacttc
cgcgtgacgagcaaggaggagaaggcgctgcgcaacaacaagaagtactcgaccatcgac
tcccagaagaacggagtgcgcttcaccaacagcaagctgagtgcgctgaacgaggagtac
gtgcgctgccgcgacgactaccaggagacgcagaaggccattgtcgtcgagatcatcaac
atctccgccggctacacggagcccatgcagctgctgagcgacgtggtggcgcggctggac
gtgctgacgagcctggcgctggtgtcgcactcggcccccgtggcgtatgtgcgcccgcgt
ctttcgccgcccggcggggacctggtgctcaagggggcgcggcacccttgcctcgaggcc
caggacgacgtcgccttcatccccaacgacgtcgccttccaccgcgccggcaccaccttc
cacatcatcaccggccccaacatgggcggcaagtcgacgttcatccggcagacgggggtg
atcgtgctcatggcgcagatgggctgcttcgtgccgtgcgacgaggcgagcgtcagcgtc
gtcgactgcatcctggcgcgcgtcggcgccggcgacagccagctccgtggagtctccacc
ttcatggccgagatgctcgagacgtccgccatcctccggtcggccacggagaactcgctg
gtgatcattgacgagctgggccgcgggacgtcgacctacgacggctttgggctggcgtgg
gccatctcggagcacgtggccacgcgcctgcgcgccctctgcctcttcgccacgcacttc
cacgagctgacggcgctcgccggccacgtgcccagcgtgtccaacctgcacgtgacggcg
ctcacctcgcaccagaccctcaccatgctctaccgcgtgcgcaagggcgtgtgcgaccag
agctttgggatccatgtggcggagttggctcacttcccgccgcacgttgtggagagcgcg
cggcgcaaggcgctggagctcgaggagttccaggccctggatgtcacgtcggacgtggac
ggagaaccagccgtcaagaaactccgctccgagcgagaggagggcgagcaaatcgtgcgg
gacttcctggacaaggtgaaggccctgccgctggactcgatggcggcggacgaggtggcg
cgctcactcgcgagcctcaagcaggaggtggcggagcgcggaaacgcgtacgtcaatggc
ttggtagcacgcgcgggcgaacacggcgtcgcggccagctga
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