Petromyzon marinus (sea lamprey): 116948331
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Entry
116948331 CDS
T09614
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04137
Mitophagy - animal
pmrn04140
Autophagy - animal
pmrn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116948331
04137 Mitophagy - animal
116948331
04148 Efferocytosis
116948331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116948331
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116948331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_4
PAS_9
HLH
TFIIA
Motif
Other DBs
NCBI-GeneID:
116948331
NCBI-ProteinID:
XP_032820787
UniProt:
A0AAJ7TQH4
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Position
33:complement(3782279..3851686)
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AA seq
978 aa
AA seq
DB search
MGPSGARLHHRSSRFGVPARAWLEKSRRFFAVYSERRKEKSRDAARCRRGWETEVFAQLA
RELPLPPAASAALDKASVMRLAISYLRLRQLLPPNRLSRCDAAAAAAAVEEVEEDHAGES
GSSLDALTLRALEGFVMVLSSEGDMTYLSDNVGKHLGLPQVEMTGNSIFEFVHPCDQEEL
REVLAQKRGAARKGADAGTERDFFVRMKCTITSRGKTVNLKSATWKVLHCTGHMRVCGDP
SGSFPEGMEQQQQQRQQHQQHQQQQQLHHHHHQQQQQQASPRAFLGAPSVSRASSIPAAN
CLVLLCSPIPHPASIETPLDSRTFLTRHAMDMKFTYCDERITDLIGYHPKELLGRSVYEY
YHALDTERVTKSHHHLFGKGQATTGHYRMLAKRGGFAWVETQATVIYSPRNAQPQCVVCV
NYVLSGVEETGTVLSLEQTERLLKTRPGDSSPPSSPCANLGGIVGAATMGESLFIKLKEE
PDELALIAPTAGDEVISLNFGLGHRCGGGGGLQHPPSYSDLSLYDDVALPSPERGDREPP
LGLPLTPPMAAQREPCPPRDSASAAFFCDARVPQPSANRRQDGAGKTRSASEESFSPLGG
DLRIDTIEKLFSVSPETKALPPTQVLTASPEHSLPKEFGSDLDLETVAPYIPMDGEDFLL
CIPESAPGFYSDSPLPKSPPGATGPPGTPATPRHLHSGIFQPPEFQQPLRTLAARSPISQ
HAPLPEISFRLDEFGVFGLNRLEETRHGKSPPSPATAAGAAATAPSAWVPSTLTAKRPKL
DSPRAAVPPRMGANAPSRMLPLAYPAPHQQQHQQQQAYAPRPSDGAHYVEMPGSLARFSG
PFMAHVVAATAAASCRKRRLSNEGAVSPMNLATYAQQPGLGASLAVQPEPYAGRACGLPA
HGDSRWSGDCATDKLAGPGRGRQALCRKPATDVASRLLAGGSSLPELTRYDCEVNAPVVD
CRRLLQGVELLRALDQTT
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggggccctcgggtgccaggttacatcaccgctcctcgcggttcggtgttccggctcgg
gcatggttagaaaagtctcggcgattttttgcggtgtactcggagcggcgcaaggagaag
tcccgtgacgcggcgcggtgccggcgtggctgggagacggaggtgttcgcccagctggcg
cgggagctgccgctgccgcccgcggcctccgccgcgctggacaaggcgtcggtgatgcgc
ctcgccatcagctacctgcgcctgcgccagctgctgccgcccaaccggctgtcccggtgc
gacgcggcggctgctgcagcggcggtggaggaggtggaagaggaccacgctggcgaatcc
ggcagctccctggacgccctcaccctgagggccctcgagggcttcgtgatggtgctgtcg
agcgaaggcgacatgacctacctgtccgacaacgtcggcaagcacctgggactgccgcag
gtggagatgacggggaacagcatctttgagttcgtccacccgtgtgaccaggaggaactc
agggaggttctcgcgcagaaacgcggcgctgccaggaagggtgcggacgctggcacggag
agggacttcttcgtccggatgaagtgcaccatcaccagccgcggcaaaaccgtcaacctc
aagtcggccacgtggaaggtcctgcactgcacgggtcacatgcgcgtgtgcggtgacccc
tcggggtcattcccggaggggatggagcagcaacaacaacagcggcagcagcatcaacaa
caccaacagcagcagcagcttcatcatcatcatcatcagcagcagcagcaacaggcatcg
cctcgtgcattccttggagcgccgtcggtgtccagggcgtcgtccatcccggccgccaac
tgcctggtgctcctctgctcgccgatcccgcacccggccagcatcgagacgccgctcgac
agccgcaccttcctgacgcgccacgccatggacatgaagttcacctactgcgacgagagg
ataaccgacctgattgggtaccacccgaaggagctgctcggccgctcggtgtacgagtac
taccacgcgctcgacacggagcgcgtcaccaagtcccaccaccacctgtttggcaagggt
caggcgacgaccggccactaccggatgctggcgaagcgcggcggcttcgcgtgggtggag
acacaggccacggtcatctacagcccgcgcaacgcacagccgcagtgcgtggtgtgcgtc
aactacgtgctcagcggcgtggaggagaccggcacggtgctgtcgctggagcaaacggag
cggctgctgaagactcggcccggcgattcgtcgccgccgtcgtcaccatgcgccaacctc
ggcggcatcgttggcgccgcgacgatgggcgagtcgctcttcattaagctcaaggaggag
ccggacgagctggcgctcatcgcccccacggccggcgacgaggtcatcagcctgaacttc
ggactcggccatcgctgcggcggtggcggtggcctgcagcatccgccgtcgtactcggac
ctctctctctacgacgacgtggcactgcccagccccgagcggggggaccgcgagcctccg
ctcgggttgcccctcactccgccgatggccgcccagcgggagccgtgcccgccccgcgac
tctgcctccgccgccttcttctgcgacgcgcgagtgccgcagccttccgccaaccggcgc
caggatggcgctggcaaaacgcgctccgcctccgaggaatccttctcgcccctgggtgga
gacctccgaatcgacaccatcgagaagctgttcagtgtgtctccggagacgaaggcccta
ccgcccacacaggtcctcacagcatccccagagcattcactcccaaaggaatttggcagc
gatctagaccttgagacggtggctccgtacatccccatggacggcgaggacttcctcctc
tgcattccggagtccgctccgggtttttactccgactccccactccccaagagccccccg
ggggccacgggcccacctggaactccggctacaccccgccacctgcactccggcatcttt
cagccccccgagttccagcaaccgcttcggaccctggccgcccgctctccaatttcccag
catgcaccgcttcccgagatcagcttccgcctggacgagttcggggtgttcggcctcaac
cgcctggaggagacgcggcacggcaagagccctccttcccccgccacggcggccggcgcc
gccgccaccgcgccgagcgcgtgggtcccgtcgaccctcacggccaagagacccaagttg
gattccccccgcgcggccgtgcctccccgcatgggagcgaacgccccatcgcggatgctg
cccctggcctacccagcgccgcaccagcagcagcaccagcagcagcaggcgtacgctcca
aggccgagtgacggtgcccactacgtggagatgccggggtccctggctcggttctccggc
cccttcatggcccacgtcgtggcggccaccgccgccgcgtcgtgccgcaagcgtcggctg
agcaacgagggagccgtgtcgccgatgaacctcgccacctacgcccagcagcccggcctc
ggtgcttcgctcgccgtacagcccgagccatacgccgggagggcgtgcggactccccgcc
cacggggactcgcgctggagcggagactgtgccaccgacaaactcgccggccctggcagg
ggccgccaggccctctgccgcaaacccgccacagacgtggcgagccggctgctggccggc
gggagctcgctgcccgagctgacgcgctacgactgcgaggtgaacgcccccgtcgtcgac
tgccgccgcctgcttcagggcgtcgagctcctgcgcgccctggaccagacgacgtaa
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