Petromyzon marinus (sea lamprey): 116948487
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Entry
116948487 CDS
T09614
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116948487 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116948487 (TAF5L)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116948487 (TAF5L)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116948487 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
116948487 (TAF5L)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116948487 (TAF5L)
STAGA complex
116948487 (TAF5L)
TFTC complex
116948487 (TAF5L)
SAGA complex
116948487 (TAF5L)
SLIK complex
116948487 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
TFIID_NTD2
Ge1_WD40
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
PEP5_VPS11_N
WD_LRWD1
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
116948487
NCBI-ProteinID:
XP_032821097
UniProt:
A0AAJ7TN86
LinkDB
All DBs
Position
33:complement(10379317..10401963)
Genome browser
AA seq
791 aa
AA seq
DB search
MKRVRSEQLQSAVNQLLKRRHYTESELAQRQSFRGSQSAEEMAASMAAQLESGPMNAVSF
GVYEPNPSHYDRQFNALRQFVNELRGEERVELQTLMSALSLALCVELALGGWRSAAEAFH
GRHVGPVAHTHEQRLLAERLGAALSRQDVGSDTCVRTLTEHKLCVELGVVAHGRLMRHLL
QGEHGLLLRAVSTHLRLDVRAQARSSAAGLELYSDGTGGSGGGGASARAGESAAAAGGLT
ADGDPEMNALPPDEVSLELLQDSIRRVREGPLNAATVCLYGFKDDSTPPGTTSTTTPAGS
ASGSGAGGTSGVAAAATSTTASSLGVGGSSGNSGVGGGAGGPVIANATSPQPGSSASSAA
AAATASTTTTAGSATASATAPPPPSTSSSSSSSFSSSSSSSFVSATAGTAGGGGGGGGVC
GGAGTVGGGSGGPSVPAPPCAAEVAPGMGMLAAGYEDSRVMLWSLGPRKLRTARHNVDVA
RINLACDILDDKVVEDSKGSDVKTLRAHSGPVYAVRFLPGGAGLLSCSEDASVRFWDPRT
FTNTAVYQGHAYPVWDVDVSALGLYFCSGSHDRTARLWVPERAFPLRVYAGHVSDVNVVR
FHPNGSYVATGSADRTVRLWSAQQGSAARLFTGHRGAVLALAFSPGGRLLASGGEDQRVR
LWDIGSGAIVKELRGHSDDITCLSFSPDGSALASGSSDGSVRVWDVRGASTNPGGGGGGS
GTGGGGTGGGGGTGAAGGGGGGAAFAADVDATEITGAAPSTRICTALNVQFMASNLLLVS
AVTRDEPAGGT
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcgtgcggagcgagcagctccagtcggccgtcaaccaactcctcaagcggcgg
cactacaccgagtcggagctggctcagcggcagagcttccggggctctcagtcggccgag
gagatggcggccagcatggcagcccaactcgagagtgggcccatgaacgcagtgtcattt
ggtgtctatgagcccaacccctcacactatgatcgccagttcaacgcactacgccaattt
gtcaatgagctgcgcggggaggagcgcgtggagctgcagacgttgatgagcgccctctcg
ctggcgctgtgcgtggagctcgcgctgggcggatggcgctctgccgccgaggcgttccac
gggcgccacgtggggcccgtcgcccacactcacgagcagcggctcctggccgagcggctg
ggtgcagcgctctcgcggcaggacgtgggctcggacacgtgcgtgcgcacgctcacggag
cacaagctgtgcgtggagctgggcgtggtggcgcacggccgcctgatgcgtcacctgctg
cagggcgagcacggcctgctgctgcgcgccgtcagcacgcacctgcggctcgacgtgcgg
gcccaggcgcgcagctccgcggcggggctcgagctttatagcgacggcaccggcggcagt
ggggggggcggtgcgagtgccagggccggagaatcggcagcagcggcaggggggctgacg
gctgacggtgaccccgagatgaacgccctcccgccggacgaggtctcgctggagctgctg
caggacagcatccggcgcgtgcgcgaggggccgctcaacgccgccaccgtctgcctctac
ggcttcaaggatgactcgacgccacccggaaccacctccaccaccactcccgccggctcc
gcctcggggtccggcgccggcgggaccagtggcgttgctgcggccgccacctctaccacc
gcctccagcctcggcgtcggtggcagcagcggtaacagcggcgtcggtggtggtgcaggt
ggccccgtgatcgccaacgccacttcgccacaaccgggatcgtcggcttcttctgccgcc
gctgccgccactgcttccaccaccacaactgccggctccgctaccgcttctgccaccgcc
ccgccacctccttccacttcctcctcctcctcctcgtcattctcgtcgtcgtcctcctcg
tcgtttgtcagtgctaccgcgggaaccgccggtggtggcggcggtggcggtggcgtttgt
ggcggtgctggaacggtgggcggcggcagcggcggaccgtctgtgccggcgcccccgtgc
gcggccgaggtggcgccggggatggggatgctggcggccggctacgaggactcgcgggtg
atgttgtggagcctggggccgcgcaagctgcgcactgcacggcacaacgtggacgtggcg
cgcatcaacctcgcttgcgacatcctggacgacaaggtggttgaggacagcaaaggcagc
gacgtgaagacgctgcgcgcccactccggtcccgtctacgccgtgcgcttcctgcccggc
ggtgcggggctgctttcgtgctccgaggacgcgagcgtgcgcttctgggacccgcgcaca
ttcaccaacaccgccgtctaccagggacatgcgtaccctgtgtgggacgtggacgtgagc
gccctgggcctgtacttctgcagcggctcgcacgaccgcacggcccgcctctgggtgccc
gagcgcgccttcccactgcgcgtctacgcaggccacgtgtcggacgtgaacgtcgtgcgc
ttccaccccaacggcagctacgtggcgacgggctccgccgaccgcacggtgcgcctgtgg
agcgcccagcagggctcggcggcacgcctcttcacgggccaccggggcgccgtgctggca
ctcgctttctcccccggagggcgcctgctcgcgtccggcggggaggaccagcgcgtccgg
ctctgggacatcggcagcggcgccatcgtcaaggagctgcgtggacactcggacgacatc
acctgcctgagcttcagccccgacggcagcgcgctggcatccggctcttccgacggctcg
gtgcgcgtgtgggatgtgcgtggagcctccacgaatcctggtggcggcggcggcggcagc
ggaactggcggcggtggaactggcggcggtggcggaaccggggcggccgggggcggcggc
ggcggcgctgcgttcgcggctgacgtcgatgcgaccgagatcacgggcgcggcgccatcg
acgcggatttgcacggcgctcaacgtgcagttcatggcctccaacctgctgctggtgagc
gccgtcacgagggacgagcctgccggtggcacgtga
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integrated database retrieval system
