Petromyzon marinus (sea lamprey): 116948593 Help Entry 116948593         CDS       T09614                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism pmrn  Petromyzon marinus (sea lamprey) Pathway pmrn04510   Focal adhesion pmrn04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:pmrn00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116948593  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     116948593  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pmrn00536]     116948593 Glycosaminoglycan binding proteins [BR:pmrn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116948593 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC TILa Motif Other DBs NCBI-GeneID:  116948593 NCBI-ProteinID:  XP_032821295 UniProt:  A0AAJ7TQQ2 LinkDB All DBs Position 34:2991220..3066832 Genome browser AA seq 1475 aa AA seqDB search MFSSVDIRQLGVVLLLAAVTVVRCQQDDLLNCVQEGNVYSDKDIWKPEACTICVCDSGNI LCDDIVCVEDVENCPNPEIPDGECCPICPTDIPEPSPTSAVIKPSITNGPIGPKGTKGDP GPKGSNGLNGDPGSSGIPGTPGKPGNNGPRGPAGPPGPPGPSAPTRFGNQAQMAGGFDEK SGQSMMGMGMTVPGPSGPPGPHGLPGSAGPPGPYGLQGIRGEQGSPGHMGPTGPPGPPGH PGDDGKNGKPGRPGDRGGPGDMGPGGMNGSPGMHGSKGHRGYNGIPGAKGESGGNGHRGE RGAAGKNGSPGNVGPQGSTGERGRPGGSGPSGARGSDGLVGSRGPAGPLGSAGSSGFVGQ PGAKGELGIGGSRGPAGPQGSHGEVGLPGPPGLVGLPGNNGHNGKSGSKGPLGNPGIAGA PGFPGPQGVLGLPGQTGLAGLKGPSGDIGIPGLKGEPGSKGEHGNAGLSGAAGLSGEEGK RGSLGEQGNVGLAGPAGARGAPGVNGFPGPNGGAGGMGLPGDRGAAGPSGARGLPGEPGN PGEAGGTGARGAPGSTGSSGPSGKSGAQGAAGQEGRLGRPGSTGGRGSPGPMGFPGPKGI DGEVGPPGATGGNGNRGPMGESGKDGENGARGAGGPMGASGERGEQGASGLGGPQGVPGS PGGPGMAGRLGDRGMPGDSGAPGISGTKGEAGTPGERGSTGSSGIQGIRGQAGTPGTSGA KGEAGVVGPSGLIGSPGASGLPGERGVSGGPGGKGEKGNNGERGYEGNPGKDGARGVIGP VGPPGPSGAPGDKGEHGASGPLGPAGPAGVNGERGSVGSAGIPGLVGSPGPSGHNGAKGE KGVAGGKGDNGAPGIHGYIGAPGPQGPSGEGGPKGALGEVGGMGMTGFPGAPGESGTGGP PGGIGPQGASGAQGKDGSMGPRGDTGTPGEPGEPGPTGLLGNQGERGERGPSGTRGTAGA PGSSGFLGSHGIQGLSGQRGERGVPGLNGPTGSLGKSGPTGEQGERGAPGNVGSPGLNGA PGESGREGSSGTDGASGRDGLAGVRGDRGEPGTPGRPGNPGNMGNPGLSGANGKDGHRGE TGPQGDSGIVGRPGSAGPLGPQGPNGAHGERGDSGERGIKGHRGWSGFQGLPGLPGPHGH QGGPGINGGSGPRGPTGPAGGRGKDGHNGQAGPLGPSGHRGRPGEAGSAGPAGSPGIPGP PGPPGPAANGYGQLPLIGMEKGPDPYPYRYRADEALKEHDAEVDVTLKSLTNQLENIMSP EGTKTDPARSCRDLMLCHSDWKSGEYWIDPNEGSVLDAMKVWCNMETGETCVYPKPKNVP SKNWWSNKGSREHKHVWFGEAMPGGFHFSYGDDTMSANIAEVQLNFLRLVAAEASQNITY LCRNSVAYADAAGSLRKAVRLMGSGELELRADGKNRFTYSMLEDGCAKHTGEWGKTVLQY KTNKPSRLPIVDIAPLDIGGPEQEFGVEIGPVCFL NT seq 4428 nt NT seq  +upstreamnt  +downstreamnt atgttcagctctgtggatatacggcaattgggagtggtgctgctgctagcggcggtgacg gtcgtcaggtgccagcaggacgacctcttgaattgtgtgcaggaagggaatgtatacagc gacaaggacatctggaaaccggaggcctgcaccatctgcgtgtgtgacagtggtaacatc ctgtgcgatgacatcgtctgcgtcgaggacgtggagaattgccccaacccggagatccct gatggagagtgctgccccatctgccccacagatatcccagagccgtcacccacgtctgct gtaataaagccctcaattacgaatggtcccattggccccaagggcacgaaaggagatcct ggcccaaaaggatccaatgggctgaacggagatccgggctcctcgggtatccccgggacc cccggcaagcctggcaacaacggcccccggggaccggcagggccccctggaccccctggc ccatccgcccccacccgctttggaaatcaagcccaaatggcaggaggattcgacgagaag tcaggacaatccatgatgggaatgggaatgactgttccgggccccagtggacctccgggt cctcatggactgccaggctctgcaggtcctcctggtccttatggtttacaaggcatccgt ggagagcaaggatctccgggtcacatgggtccaactggtcccccaggcccccctgggcat cctggagatgatggcaagaacgggaagccgggccggccaggagatcgtggcggaccgggt gacatgggtcctggtggaatgaacgggagccccggaatgcacggatccaagggacacagg ggatacaacgggattcctggagccaagggagaatctggagggaatggtcaccggggggag agaggtgcggctggaaagaacggttccccaggcaacgtgggcccccagggatcaactggt gagcgaggacgtcccggagggtctggtcctagcggtgcccgtggaagcgatgggctggtg gggtcaaggggaccagctggtccactgggcagcgctgggtcatctggctttgttgggcag cccggagctaagggtgagctcggtattggtgggtcgcgtgggcctgcggggccacagggg tcacatggtgaggtcggactgcctgggcctcctggcctcgtcgggctcccgggaaacaac ggacataatggaaaatctggaagcaaaggaccacttggaaaccctggcattgctggagcc cctggcttccctggcccccagggagtgttgggcctcccaggccaaaccggcctcgctggc ctcaaggggccctctggcgatattggaattcctggcttgaagggagaaccaggctccaag ggtgaacacggcaacgctggtctctcgggagccgcgggtttgtctggagaagagggcaag cgtggcagcctcggcgagcagggcaacgttggcttggccggcccggctggtgccaggggt gcccctggagtcaatggcttcccaggtcccaacgggggtgcgggtggcatgggcctgcct ggtgatcgaggagcggccggtccttccggagccaggggcctccccggcgagcccggcaac cccggcgaggccggtggcacgggagcgaggggtgcaccggggtctactggcagcagtggt ccttctggaaagtctggtgctcagggtgcagctggacaagagggccgattgggtcgacca ggctccaccggtggccgaggatctcctggtcccatgggattccctgggcccaagggcatt gatggggaggtcgggccacccggtgccactggcggtaatggaaaccgcggtcccatgggc gagtctgggaaggatggggagaatggagcacggggagcgggaggccccatgggcgcaagc ggagaacgaggagagcagggggcctctggactgggtggcccacagggtgtgcctggctcg cctggtggacctggcatggctggcagactgggtgacagaggaatgccgggagattctggt gcgcctggaatttctggcaccaagggtgaggccggcacacctggtgagcgcggttctact ggttccagcggcatccagggcatccgtggtcaggctggaacccccggcacctctggagcc aagggcgaggctggagttgttgggccatccggtctcattggaagccccggtgcctctggg ctgccgggtgagagaggtgtaagcggaggccccggaggcaagggggaaaagggtaacaac ggcgagagaggctacgaagggaaccccggcaaagacggagcccgaggtgtgattggtccg gttgggcctccaggccctagcggtgctccaggcgacaaaggcgagcatggcgcctctggt cctcttgggccggccggccccgcaggagtgaacggcgagcgaggcagtgtcggctccgct ggaatccctgggctcgtcggatctcccgggcccagcggccacaatggggccaagggtgag aagggagtggccggtgggaagggtgataacggagcccctggcatccatggatacatcggg gccccgggcccacagggaccgtctggagagggcggccccaagggagctcttggtgaagtt ggcggcatgggcatgactggattcccaggagcgcctggtgaatctggcaccggtggtcct ccgggaggcatcggtcctcagggtgcatcgggagcgcagggcaaggacggcagcatgggc ccacgcggtgacactggcacaccaggcgagcccggggagcccggccccaccggcctcctt ggcaatcaaggagagcgtggcgagaggggccctagcggaacccggggtaccgctggggca ccaggcagcagtggcttcctgggttctcatggtatccagggtctgtccggccagcgtggt gagaggggcgtccctggactcaacggccctacgggctctctcggcaaaagcggtcccacg ggtgaacaaggcgaacgtggagctccgggtaacgtgggctccccgggtctcaatggcgct cccggcgagtccggccgtgagggttcatctggtactgatggagcttccgggcgcgatggc cttgctggcgtgcggggagaccgcggtgaacctgggacgcccggccgcccaggcaatcca ggcaacatgggcaaccctggcctttcaggagccaacggcaaggacgggcacaggggcgaa acgggccctcaaggagattcaggcatcgtgggcagacctggctccgcagggccgcttggc cctcaggggccaaacggagcccatggcgagaggggcgactcaggcgagaggggaattaag ggccaccgtggctggagcggtttccagggtctgcctggcctgccgggtcctcacggtcac caaggaggccctggtatcaatggcggcagtggtccaaggggacccacgggcccagcgggc gggcgtggcaaggatgggcacaatggacaggctggccccctcgggccctctggccaccgc ggtcgtccaggggaggctggcagtgctggccctgctggttcaccaggtatccctgggccc ccaggccctcccggccctgcagcaaacggctacggacagttgcccttgattggcatggag aagggaccagacccatacccttaccggtaccgtgctgatgaggcgctcaaggagcacgat gctgaggtggatgtgaccctcaagagcctcaccaaccagctggagaacatcatgagcccc gagggcaccaagaccgacccggctcgcagctgtcgagacctcatgctctgccactctgac tggaagagcggtgagtactggatcgaccctaatgagggctcagtgctggacgccatgaag gtctggtgcaacatggagaccggggagacctgcgtctatcccaagcccaagaacgttccc agcaagaactggtggagcaataagggcagccgcgagcacaagcatgtctggtttggagag gccatgcccggtggcttccacttcagctacggagacgacaccatgtcggccaacatcgcc gaggtgcagctcaacttcctgcgcctcgtggccgccgaagcctcccagaacatcacgtac ctgtgccgtaacagcgtggcgtacgcggacgccgcgggcagcctgcgcaaggccgtgcgg ctcatgggctcgggcgagctcgagctgcgtgcagatggcaagaaccgcttcacctactcc atgctggaggacggctgcgcgaaacacactggcgagtggggaaagacagttctgcaatac aagacaaacaagccgtctcgtctgccgatagtggatatcgcacctctggacattggtgga cccgagcaagagtttggcgtcgaaattggccccgtctgcttcctgtaa

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