Petromyzon marinus (sea lamprey): 116948736
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Entry
116948736 CDS
T09614
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116948736 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116948736 (BARD1)
04121 Ubiquitin system [BR:
pmrn04121
]
116948736 (BARD1)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116948736 (BARD1)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116948736 (BARD1)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116948736 (BARD1)
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
116948736 (BARD1)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116948736 (BARD1)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116948736 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
zf-RING_6
Ank_5
BRCT
Ank_4
Ank_3
BRCT_2
PTCB-BRCT
RTT107_BRCT_5
zf-RING_5
Ank_KRIT1
zf-RING_10
zf-C3HC4_2
zf-C3HC4
Prok-RING_4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
116948736
NCBI-ProteinID:
XP_032821653
UniProt:
A0AAJ7TPA3
LinkDB
All DBs
Position
34:complement(11984559..12004558)
Genome browser
AA seq
738 aa
AA seq
DB search
MMESTIISWGATAGALVHLEELLGCALCGGTLCEPCSLGGCEHVFCRLCVSDHVGNSCPI
CQAPSWVRDLQANRQLAGMVTLCRQLRELLATDTPPSDKACSLSLQQPGPREKDIKPSPE
IIKTPELTKKANVVSMQFSPRSGQVRCHIKKPTRPLEDKENAKTSAADGSYASVYDFQSS
QSSPDQTLIHPPQPRRLKTVRKRLSAINKSWGFGKKRKKNTSESTDVASKIEVVQKDPAD
NRLISFGPEQVFLIDSSNVTCSAVSGSATPSPDANSAVAAGSTIFQSLWSPTMSGESVES
NPSGRNSESEKTTTDSALGAMSKRALERPSGASPSKKAKSCWNGSILQKSPPGVGGRRKA
EGSVAGSPGTSEVLKKNRKGETPLHVAAIKGDIDGVEHLLENGANPNIKDNAGWTPLHEA
CNHGHARVVELLLDHGAFINAPGYENDSPLHDAVSNGHTHVAGLLVGRGADQHALNMLGL
KPLDYANSEEMRMVFTSQPFEPSTPTFSLPASLPSGPIGPMVLLDSRLSEHQKESLKRVA
TTLGGRVVSTFNNSATHVIVDSTMQIPRTMKCFLAILNGCWIIGFQWVQACLARHERVPE
QDFEVRGRDGSLPCRGPERGRLNKLQQLPGLFDGCYFFLGGPFDEPSRFDLSEMVRVGGG
RMLSRQPKADSDVTQSVRRAAYHARRHSDQEFCTHYVVYDGAWLGGLSGVSRLGKVWTVP
SGWLVECVLAFELLPFDV
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgatggagtcaacgatcatctcctggggagccacggcgggcgcgctcgtccacctcgag
gagctcttgggatgcgcgctctgtggaggcacgctgtgtgagccgtgcagcttgggaggc
tgtgaacacgttttctgccggctttgcgtgagcgatcatgtcggcaacagctgccccatc
tgtcaggcaccgtcctgggtcagagatctgcaggcaaatcggcagcttgccggtatggtg
accctgtgccggcagctgcgtgagctcctggcaaccgacactccaccctctgacaaagcg
tgttcactctccctacagcaaccagggccacgagagaaagatatcaagccatcacctgaa
attataaaaacgccggagctgaccaaaaaagccaatgtggtcagcatgcagttcagtccc
cgcagtgggcaggtgcgttgccacatcaaaaagcccactcggccacttgaggacaaggag
aatgccaagaccagtgctgcagatggaagttacgcatcggtgtacgacttccaatcctcc
cagtcgtctcctgatcagacactgattcatccaccacagcccaggcgtctaaaaacggta
cggaagaggctatcggccattaacaagtcatggggttttggcaaaaagcggaagaagaat
acaagcgagagcacagatgttgccagtaagatagaagttgtacaaaaagatccggctgat
aaccgcctcatctcgtttggccccgagcaagtgtttctaatcgatagcagtaatgtgaca
tgtagtgctgtaagcgggagtgccactccgtccccggacgctaacagtgccgtggccgct
ggaagcacaattttccagtcattgtggagcccaacgatgtcgggagagtcggtcgagagc
aacccatcaggcagaaactcggagtcagagaagacgacaactgactctgccttgggagcg
atgagcaagcgggccttggagcggccgagcggtgcaagtccttccaagaaagcaaagagt
tgctggaatggaagcattctgcaaaagtcgccccctggcgttggcgggaggaggaaggcc
gaggggagtgtggctggctcacccgggacctcggaggtcctgaagaagaacagaaagggc
gagacaccgctgcacgtcgctgccatcaagggtgatattgatggagttgaacaccttctt
gagaatggtgccaatccaaacatcaaggacaatgctggatggacccctctgcacgaggcg
tgcaaccacggacacgcgcgggtggtggagctgctgctggaccatggcgcgttcatcaat
gctccgggctacgagaacgactccccgctgcacgacgccgtctccaacgggcacacgcac
gtggctggcctgctcgtgggtcgcggggccgaccagcacgcgctgaacatgctgggcttg
aaaccgctggactatgccaatagcgaggagatgcgcatggtgttcaccagccagccgttc
gagcccagcacgccgaccttcagtctgcccgcgagccttccgagtggtcccattggcccc
atggttttgctggacagcagactatccgagcatcagaaggagtccctgaagagagttgcc
acaacactgggaggacgagttgtctccacgttcaacaactctgcaactcacgtcatcgtc
gactccacaatgcaaattccccgcaccatgaaatgcttcttggccatcctcaacggctgc
tggattatcggcttccagtgggtgcaagcctgtctggcgaggcacgagcgcgtgccagaa
caggacttcgaagtgaggggacgtgacggctccctgccgtgtcgtggtccggagagaggg
agactcaacaaacttcagcagcttccgggcctcttcgacggttgctacttcttcctgggt
ggccccttcgacgagcccagccgcttcgacttgtcagagatggtgcgcgtgggcggcggg
cgcatgctgtcgcggcagccgaaggccgacagcgacgtgacgcagagcgtgcgccgcgcc
gcgtaccacgcgcgccgccactcggaccaagagttctgcacgcactacgtggtgtacgac
ggcgcgtggctgggcggcctcagcggagtgtcgcggctcggcaaagtgtggaccgtcccg
tctgggtggttggtggagtgcgtgctcgcgttcgagctcttgccgtttgacgtgtag
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